PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR010264
Description: Plant self-incompatibility S1

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	13	CH_aly_561	3	3	0.000611959
Arabidopsis lyrata	scaffold_3	13	CH_aly_146	5	5	0.0000000041514
Arabidopsis lyrata	scaffold_5	13	CH_aly_562	3	3	0.000611959
Arabidopsis lyrata	scaffold_5	13	CH_aly_266	4	4	0.00000160355
Arabidopsis lyrata	scaffold_3	15	CH_aly_61	3	4	0.000859623
Arabidopsis thaliana	1	13	CH_ath_470	3	3	0.000232122
Arabidopsis thaliana	1	13	CH_ath_126	5	5	0.000000000777629
Arabidopsis thaliana	3	13	CH_ath_584	3	4	0.000927176
Arabidopsis thaliana	3	13	CH_ath_585	3	4	0.000927176
Arabidopsis thaliana	3	13	CH_ath_469	3	3	0.000232122
Arabidopsis thaliana	4	13	CH_ath_471	3	3	0.000232122
Brassica rapa	A06	13	CH_bra_411	3	4	0.00034577
Brassica rapa	A09	13	CH_bra_410	3	4	0.00034577
Brassica rapa	A09	15	CH_bra_3	3	4	0.000239362
Capsella rubella	scaffold_1	13	CH_cru_282	4	4	0.00000443152
Capsella rubella	scaffold_1	13	CH_cru_281	4	4	0.00000443152
Capsella rubella	scaffold_3	13	CH_cru_116	6	7	0.000000000377193
Capsella rubella	scaffold_5	13	CH_cru_283	4	4	0.00000443152
Capsella rubella	scaffold_7	13	CH_cru_345	5	14	0.0000303396
Carica papaya	supercontig_59	13	CH_cpa_181	3	5	0.0000233123
Citrullus lanatus	Chr9	13	CH_cla_147	4	6	0.000000134292
Citrullus lanatus	Chr9	13	CH_cla_13	9	10	6.56202e-24
Citrus sinensis	scaffold00029	13	CH_csi_194	3	3	0.0000194969
Citrus sinensis	scaffold00064	13	CH_csi_225	3	4	0.0000779289
Citrus sinensis	scaffold00107	13	CH_csi_11	10	16	1.96322e-23
Citrus sinensis	scaffold00107	14	CH_csi_9	10	16	1.96322e-23
Citrus sinensis	scaffold00107	15	CH_csi_2	4	10	0.000000123118
Cucumis melo	CM3.5_scaffold00066	13	CH_cme_59	7	32	0.000000000000345192
Eucalyptus grandis	scaffold_5	13	CH_egr_1149	4	33	0.000305116
Eucalyptus grandis	scaffold_8	13	CH_egr_801	4	11	0.00000248894
Fragaria vesca	LG2	13	CH_fve_93	5	6	0.00000000000896687
Fragaria vesca	scf0513040	13	CH_fve_270	4	10	0.000000653744
Glycine max	Gm01	13	CH_gma_36	8	14	1.40084e-19
Glycine max	Gm03	13	CH_gma_424	3	3	0.00000533921
Glycine max	Gm09	13	CH_gma_425	3	3	0.00000533921
Glycine max	Gm09	15	CH_gma_1	3	3	0.00000114998
Gossypium raimondii	Chr04	13	CH_gra_85	6	7	0.0000000000000157843
Gossypium raimondii	Chr04	13	CH_gra_346	3	3	0.0000111334
Gossypium raimondii	Chr06	13	CH_gra_385	3	4	0.0000445118
Gossypium raimondii	Chr09	13	CH_gra_111	6	12	0.00000000000207848
Lotus japonicus	chr1	13	CH_lja_6	7	14	2.84966e-16
Malus domestica	17	13	CH_mdo_197	3	3	0.00000145417
Malus domestica	5	13	CH_mdo_196	3	3	0.00000145417
Manihot esculenta	scaffold06980	13	CH_mes_11	8	9	8.6121e-21
Manihot esculenta	scaffold06980	15	CH_mes_3	3	7	0.0000779355
Medicago truncatula	chr1	13	CH_mtr_364	5	8	0.00000000685503
Medicago truncatula	chr1	13	CH_mtr_765	4	10	0.0000232136
Medicago truncatula	chr6	13	CH_mtr_363	5	8	0.00000000685503
Medicago truncatula	chr8	13	CH_mtr_251	6	10	0.000000000027971
Medicago truncatula	chr1	14	CH_mtr_125	11	213	0.000000000107801
Medicago truncatula	chr8	15	CH_mtr_13	3	5	0.000174063
Populus trichocarpa	Chr01	13	CH_ptr_447	3	3	0.00000658893
Populus trichocarpa	Chr18	13	CH_ptr_291	4	6	0.0000000491841
Prunus persica	scaffold_1	13	CH_ppe_4	27	50	6.79936e-59
Prunus persica	scaffold_1	13	CH_ppe_45	9	9	5.50132e-21
Prunus persica	scaffold_8	13	CH_ppe_63	8	8	3.31729e-18
Prunus persica	scaffold_1	14	CH_ppe_4	35	193	5.29628e-59
Ricinus communis	29844	13	CH_rco_258	3	3	0.0000473873
Ricinus communis	29904	13	CH_rco_10	12	30	4.98217e-24
Ricinus communis	29923	13	CH_rco_147	5	13	0.0000000875391
Ricinus communis	30204	13	CH_rco_72	5	5	0.0000000000685593
Ricinus communis	29904	14	CH_rco_9	12	30	4.98217e-24
Ricinus communis	29904	15	CH_rco_2	4	25	0.0000176553
Ricinus communis	29923	15	CH_rco_14	3	13	0.00090668
Solanum lycopersicum	ch09	13	CH_sly_27	8	8	1.56806e-23
Solanum tuberosum	chr09	13	CH_stu_1	26	26	2.15274e-77
Solanum tuberosum	chr10	13	CH_stu_506	4	6	0.000000757647
Solanum tuberosum	chr09	14	CH_stu_1	26	26	2.15274e-77
Thellungiella parvula	ch5-1	13	CH_tpa_170	3	3	0.0000125996
Theobroma cacao	scaffold_1	13	CH_tca_323	3	3	0.00000153366
Theobroma cacao	scaffold_4	13	CH_tca_189	4	6	0.0000000070541
Vitis vinifera	chr19	13	CH_vvi_157	4	7	0.000000000223335

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V