PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr2.sca016	13	CH_bvu_62	5	8	0.00000000000919777
Beta vulgaris	Bvchr9.sca025	13	CH_bvu_197	3	3	0.00000167845
Citrus sinensis	scaffold00003	13	CH_csi_121	3	3	0.000000402413
Eucalyptus grandis	scaffold_6	13	CH_egr_502	5	16	0.00000000114318
Fragaria vesca	LG7	13	CH_fve_256	3	3	0.000000451778
Glycine max	Gm11	13	CH_gma_497	3	4	0.000024018
Glycine max	Gm13	13	CH_gma_144	5	7	0.0000000000238156
Glycine max	Gm15	13	CH_gma_124	5	6	0.00000000000680689
Gossypium raimondii	Chr09	13	CH_gra_286	3	3	0.00000122467
Lotus japonicus	chr2	13	CH_lja_75	3	4	0.000000108464
Malus domestica	2	13	CH_mdo_286	3	7	0.0000319667
Malus domestica	7	13	CH_mdo_63	4	5	0.00000000105463
Manihot esculenta	scaffold05875	13	CH_mes_164	3	3	0.00000297292
Manihot esculenta	scaffold08873	13	CH_mes_165	3	3	0.00000297292
Medicago truncatula	chr3	13	CH_mtr_478	4	12	0.000000131016
Medicago truncatula	chr8	13	CH_mtr_152	6	12	0.000000000000010479
Populus trichocarpa	Chr01	13	CH_ptr_388	3	3	0.00000106405
Prunus persica	scaffold_2	13	CH_ppe_351	3	3	0.000000654752
Ricinus communis	30131	13	CH_rco_186	3	3	0.00000081004
Solanum lycopersicum	ch01	13	CH_sly_181	4	5	0.00000000140213
Solanum tuberosum	chr01	13	CH_stu_288	4	4	0.000000000274043
Thellungiella parvula	ch4-6	13	CH_tpa_40	4	4	0.000000000189731
Vitis vinifera	chr13_random	13	CH_vvi_509	3	5	0.000112731
Vitis vinifera	chrUn	13	CH_vvi_16	13	18	8.69121e-35
Vitis vinifera	chrUn	14	CH_vvi_16	13	18	8.69121e-35

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V