PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr2	13	CH_cla_332	3	3	0.000143922
Fragaria vesca	LG7	13	CH_fve_10	14	17	1.59419e-32
Fragaria vesca	LG7	14	CH_fve_10	14	17	1.59419e-32
Malus domestica	7	13	CH_mdo_483	3	4	0.000316805
Medicago truncatula	chr2	13	CH_mtr_727	4	9	0.0000125041
Theobroma cacao	scaffold_1	13	CH_tca_103	6	7	0.00000000000531788
Vitis vinifera	chr6	13	CH_vvi_522	3	3	0.000210469
Zea mays	1	13	CH_zma_9	12	16	1.35511e-23
Zea mays	1	14	CH_zma_7	12	16	1.35511e-23

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V