PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_8	13	CH_aly_409	3	3	0.000117201
Arabidopsis lyrata	scaffold_8	15	CH_aly_30	3	3	0.0000969603
Brassica rapa	A06	13	CH_bra_424	3	3	0.000463836
Cucumis melo	CM3.5_scaffold00075	13	CH_cme_227	4	9	0.0000228724
Glycine max	Gm14	13	CH_gma_735	3	3	0.000548123
Populus trichocarpa	Chr08	13	CH_ptr_688	3	3	0.000317429
Populus trichocarpa	Chr10	13	CH_ptr_687	3	3	0.000317429
Populus trichocarpa	Chr08	15	CH_ptr_11	3	3	0.00019493
Populus trichocarpa	Chr10	15	CH_ptr_10	3	3	0.00019493
Thellungiella parvula	ch7-4	13	CH_tpa_46	5	5	0.000000000512318
Theobroma cacao	scaffold_5	13	CH_tca_279	4	4	0.000000432609
Vitis vinifera	chr13	13	CH_vvi_39	12	26	6.81872e-22
Vitis vinifera	chr13	14	CH_vvi_36	12	26	6.81872e-22

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V