PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_254	4	4	0.00000201403
Brassica rapa	A04	13	CH_bra_212	4	4	0.00000429507
Brassica rapa	A05	13	CH_bra_32	7	8	0.00000000000104716
Carica papaya	supercontig_223	13	CH_cpa_173	4	12	0.0000170727
Glycine max	Gm16	13	CH_gma_575	3	3	0.000102915
Malus domestica	13	13	CH_mdo_28	8	25	0.00000000000124509
Malus domestica	13	13	CH_mdo_223	4	6	0.0000038168
Malus domestica	13	14	CH_mdo_12	13	147	0.0000000000000257505
Malus domestica	2	14	CH_mdo_9	10	40	0.00000000000000187246
Oryza sativa ssp. japonica	11	13	CH_osa_74	9	13	3.14592e-16
Oryza sativa ssp. japonica	6	13	CH_osa_712	4	8	0.00022451
Oryza sativa ssp. japonica	10	14	CH_osa_1	44	114	1.7306e-79
Prunus persica	scaffold_2	13	CH_ppe_57	12	49	6.83106e-19
Prunus persica	scaffold_2	14	CH_ppe_47	12	49	6.83106e-19
Zea mays	4	13	CH_zma_508	3	4	0.000601953
Zea mays	6	13	CH_zma_245	4	7	0.00000792744

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V