PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00010	14	CH_atr_40	10	221	0.0000132618
Citrullus lanatus	Chr2	13	CH_cla_126	5	5	0.0000000240647
Citrus sinensis	scaffold00014	13	CH_csi_266	4	7	0.000131655
Eucalyptus grandis	scaffold_6	13	CH_egr_403	7	8	0.0000000000164863
Eucalyptus grandis	scaffold_9	13	CH_egr_446	9	26	0.000000000132357
Eucalyptus grandis	scaffold_9	14	CH_egr_232	10	80	0.000000258838
Fragaria vesca	LG5	13	CH_fve_460	5	13	0.0000841112
Fragaria vesca	LG6	13	CH_fve_339	5	9	0.00000836006
Fragaria vesca	LG7	14	CH_fve_48	10	82	0.000000209364
Lotus japonicus	chr5	13	CH_lja_81	5	10	0.000000247828
Malus domestica	2	13	CH_mdo_15	10	23	9.47207e-16
Malus domestica	4	13	CH_mdo_623	3	3	0.000920378
Malus domestica	2	14	CH_mdo_7	10	23	9.47207e-16
Malus domestica	6	14	CH_mdo_33	10	294	0.000498032
Medicago truncatula	chr4	13	CH_mtr_392	5	6	0.0000000165935
Solanum lycopersicum	ch05	13	CH_sly_296	5	7	0.000000351829
Solanum tuberosum	chr04	13	CH_stu_804	5	14	0.0000686313
Vitis vinifera	chr18	13	CH_vvi_110	13	72	0.000000000000441376
Vitis vinifera	chr18	14	CH_vvi_53	18	202	0.0000000000000872702

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V