PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: InterPro domain
Identifier: IPR008930
Description: Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00003	13	CH_atr_155	4	4	0.0000000259969
Amborella trichopoda	scaffold00003	15	CH_atr_3	4	4	0.00000000574153
Carica papaya	supercontig_155	13	CH_cpa_191	3	3	0.000032518
Cucumis melo	CM3.5_scaffold00003	13	CH_cme_402	3	4	0.000320958
Cucumis melo	CM3.5_scaffold01595	13	CH_cme_310	3	3	0.0000803256
Eucalyptus grandis	scaffold_11	13	CH_egr_451	6	7	0.000000000193359
Fragaria vesca	LG2	13	CH_fve_466	4	10	0.0000966067
Glycine max	Gm03	13	CH_gma_609	3	4	0.000141981
Lotus japonicus	chr3	13	CH_lja_146	3	3	0.0000198298
Malus domestica	17	15	CH_mdo_17	3	5	0.000393852
Medicago truncatula	chr8	13	CH_mtr_334	6	19	0.00000000196735
Oryza sativa ssp. japonica	11	13	CH_osa_641	4	14	0.000116836
Oryza sativa ssp. japonica	12	13	CH_osa_760	3	4	0.000399892
Oryza sativa ssp. japonica	12	15	CH_osa_33	3	4	0.0000593291
Solanum tuberosum	chr12	13	CH_stu_75	11	14	8.01981e-22
Solanum tuberosum	chr12	14	CH_stu_66	11	14	8.01981e-22
Vitis vinifera	chr10	13	CH_vvi_31	14	18	3.36153e-25
Vitis vinifera	chr10_random	13	CH_vvi_370	5	8	0.00000477833
Vitis vinifera	chr4	13	CH_vvi_412	4	4	0.000017403
Vitis vinifera	chr9	13	CH_vvi_3	30	46	1.45233e-54
Vitis vinifera	chr10	14	CH_vvi_31	14	18	3.36153e-25
Vitis vinifera	chr9	14	CH_vvi_3	30	46	1.45233e-54
Zea mays	10	14	CH_zma_22	11	242	0.000000000811158

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V