Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR008502
- Description
- Prolamin-like domain
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00017 | 13 | CH_atr_447 | 3 | 12 | 0.000339298 |
Amborella trichopoda | scaffold00067 | 13 | CH_atr_256 | 3 | 4 | 0.00000618272 |
Arabidopsis lyrata | scaffold_1 | 13 | CH_aly_47 | 8 | 8 | 8.90349e-17 |
Arabidopsis lyrata | scaffold_2 | 13 | CH_aly_20 | 10 | 10 | 5.75245e-22 |
Arabidopsis lyrata | scaffold_4 | 13 | CH_aly_234 | 8 | 69 | 0.000000646706 |
Arabidopsis lyrata | scaffold_5 | 13 | CH_aly_173 | 5 | 6 | 0.0000000296205 |
Arabidopsis lyrata | scaffold_5 | 13 | CH_aly_94 | 6 | 6 | 0.0000000000131222 |
Arabidopsis lyrata | scaffold_8 | 13 | CH_aly_74 | 7 | 8 | 0.000000000000274473 |
Arabidopsis lyrata | scaffold_8 | 13 | CH_aly_174 | 5 | 6 | 0.0000000296205 |
Arabidopsis lyrata | scaffold_2 | 14 | CH_aly_18 | 10 | 10 | 5.75245e-22 |
Arabidopsis lyrata | scaffold_8 | 14 | CH_aly_38 | 13 | 298 | 0.0000000810374 |
Arabidopsis lyrata | scaffold_8 | 15 | CH_aly_13 | 4 | 6 | 0.0000028237 |
Arabidopsis thaliana | 1 | 13 | CH_ath_463 | 4 | 8 | 0.000209637 |
Arabidopsis thaliana | 2 | 13 | CH_ath_589 | 3 | 3 | 0.000996191 |
Arabidopsis thaliana | 5 | 13 | CH_ath_1 | 28 | 32 | 1.64689e-63 |
Arabidopsis thaliana | 5 | 13 | CH_ath_90 | 7 | 11 | 0.0000000000260401 |
Arabidopsis thaliana | 5 | 14 | CH_ath_1 | 28 | 32 | 1.64689e-63 |
Beta vulgaris | Bvchr8_un.sca003 | 13 | CH_bvu_262 | 3 | 10 | 0.0000335322 |
Brassica rapa | A01 | 13 | CH_bra_5 | 11 | 29 | 2.02398e-22 |
Brassica rapa | A03 | 13 | CH_bra_408 | 3 | 5 | 0.000337085 |
Brassica rapa | A05 | 13 | CH_bra_140 | 4 | 5 | 0.000000150649 |
Brassica rapa | A07 | 13 | CH_bra_288 | 3 | 3 | 0.0000337554 |
Brassica rapa | A01 | 14 | CH_bra_5 | 11 | 29 | 2.02398e-22 |
Capsella rubella | scaffold_2 | 13 | CH_cru_7 | 19 | 48 | 1.49731e-32 |
Capsella rubella | scaffold_4 | 13 | CH_cru_522 | 3 | 3 | 0.000614311 |
Capsella rubella | scaffold_5 | 13 | CH_cru_257 | 4 | 4 | 0.0000017115 |
Capsella rubella | scaffold_2 | 14 | CH_cru_7 | 19 | 48 | 1.49731e-32 |
Carica papaya | supercontig_34 | 13 | CH_cpa_30 | 5 | 5 | 0.00000000000291097 |
Citrullus lanatus | Chr8 | 13 | CH_cla_406 | 3 | 31 | 0.000487016 |
Citrus sinensis | scaffold00013 | 13 | CH_csi_63 | 5 | 6 | 0.000000000343891 |
Citrus sinensis | scaffold00094 | 13 | CH_csi_111 | 4 | 5 | 0.000000247399 |
Cucumis melo | CM3.5_scaffold00004 | 13 | CH_cme_482 | 2 | 2 | 0.000765462 |
Eucalyptus grandis | scaffold_3 | 13 | CH_egr_700 | 3 | 3 | 0.000000286756 |
Glycine max | Gm06 | 13 | CH_gma_213 | 4 | 5 | 0.00000000294443 |
Gossypium raimondii | Chr09 | 13 | CH_gra_11 | 13 | 13 | 9.86965e-38 |
Gossypium raimondii | Chr13 | 13 | CH_gra_362 | 3 | 3 | 0.0000173852 |
Gossypium raimondii | Chr09 | 14 | CH_gra_12 | 13 | 13 | 9.86965e-38 |
Manihot esculenta | scaffold06948 | 13 | CH_mes_343 | 2 | 2 | 0.000284738 |
Medicago truncatula | chr8 | 13 | CH_mtr_371 | 4 | 8 | 0.00000000827214 |
Populus trichocarpa | Chr04 | 13 | CH_ptr_22 | 13 | 20 | 1.48174e-31 |
Populus trichocarpa | scaffold_27 | 13 | CH_ptr_106 | 8 | 25 | 0.0000000000000125191 |
Populus trichocarpa | Chr04 | 14 | CH_ptr_23 | 13 | 20 | 1.48174e-31 |
Prunus persica | scaffold_2 | 13 | CH_ppe_479 | 3 | 3 | 0.0000316463 |
Prunus persica | scaffold_5 | 13 | CH_ppe_649 | 3 | 5 | 0.000315979 |
Prunus persica | scaffold_6 | 13 | CH_ppe_31 | 10 | 11 | 1.23177e-25 |
Prunus persica | scaffold_8 | 13 | CH_ppe_731 | 4 | 29 | 0.000717266 |
Prunus persica | scaffold_6 | 14 | CH_ppe_30 | 10 | 11 | 1.23177e-25 |
Ricinus communis | 29991 | 13 | CH_rco_217 | 3 | 4 | 0.00000485893 |
Solanum lycopersicum | ch05 | 13 | CH_sly_317 | 4 | 16 | 0.000000735284 |
Solanum tuberosum | chr05 | 13 | CH_stu_333 | 6 | 56 | 0.00000000216045 |
Solanum tuberosum | chr11 | 13 | CH_stu_834 | 3 | 8 | 0.000123705 |
Thellungiella parvula | ch4-2 | 13 | CH_tpa_101 | 4 | 5 | 0.000000132032 |
Theobroma cacao | scaffold_7 | 13 | CH_tca_5 | 23 | 52 | 4.50729e-50 |
Theobroma cacao | scaffold_9 | 13 | CH_tca_479 | 3 | 3 | 0.0000860311 |
Theobroma cacao | scaffold_7 | 14 | CH_tca_5 | 23 | 52 | 4.50729e-50 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |