PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR008266
Description: Tyrosine-protein kinase, active site

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	13	CH_aly_401	3	5	0.0000794568
Beta vulgaris	Bvchr7.sca011	13	CH_bvu_274	3	5	0.0000508676
Capsella rubella	scaffold_1	13	CH_cru_289	4	11	0.00000554238
Carica papaya	supercontig_165	13	CH_cpa_184	3	4	0.0000257191
Citrus sinensis	scaffold00054	13	CH_csi_221	3	3	0.0000588529
Eucalyptus grandis	scaffold_1	13	CH_egr_27	19	23	1.94293e-38
Eucalyptus grandis	scaffold_11	13	CH_egr_431	9	29	0.000000000060361
Eucalyptus grandis	scaffold_3	13	CH_egr_378	8	14	0.00000000000507386
Eucalyptus grandis	scaffold_6	13	CH_egr_274	8	9	0.0000000000000154639
Eucalyptus grandis	scaffold_6	13	CH_egr_523	7	15	0.0000000028659
Eucalyptus grandis	scaffold_1	14	CH_egr_29	19	23	1.94293e-38
Eucalyptus grandis	scaffold_11	14	CH_egr_240	13	265	0.00000188451
Eucalyptus grandis	scaffold_6	14	CH_egr_203	16	275	0.000000000728765
Fragaria vesca	LG2	13	CH_fve_692	3	6	0.000905208
Fragaria vesca	LG5	13	CH_fve_113	5	5	0.0000000000484033
Fragaria vesca	LG5	13	CH_fve_214	5	12	0.000000038107
Glycine max	Gm16	13	CH_gma_198	6	14	0.000000000935262
Glycine max	Gm18	13	CH_gma_296	5	11	0.000000111359
Glycine max	Gm18	13	CH_gma_50	11	47	1.53809e-17
Glycine max	Gm18	14	CH_gma_28	16	228	2.17224e-18
Gossypium raimondii	Chr06	13	CH_gra_35	13	39	9.44755e-24
Gossypium raimondii	Chr10	13	CH_gra_435	4	13	0.00011047
Gossypium raimondii	Chr11	13	CH_gra_91	8	19	0.0000000000000355983
Gossypium raimondii	Chr06	14	CH_gra_35	13	39	9.44755e-24
Lotus japonicus	chr5	13	CH_lja_133	4	20	0.00000599695
Malus domestica	8	13	CH_mdo_416	3	4	0.000169186
Malus domestica	9	13	CH_mdo_110	4	4	0.0000000400542
Medicago truncatula	chr1	13	CH_mtr_411	5	11	0.0000000273024
Medicago truncatula	chr1	13	CH_mtr_452	5	13	0.0000000759359
Medicago truncatula	chr7	13	CH_mtr_1240	5	75	0.000969355
Medicago truncatula	chr7	13	CH_mtr_271	7	30	0.0000000001022
Medicago truncatula	chr8	13	CH_mtr_571	4	6	0.000000935043
Medicago truncatula	chr1	14	CH_mtr_112	10	100	0.000000000000585764
Populus trichocarpa	Chr02	13	CH_ptr_436	4	6	0.00000508325
Populus trichocarpa	Chr12	13	CH_ptr_635	3	3	0.000203658
Populus trichocarpa	Chr13	13	CH_ptr_555	4	10	0.0000707849
Populus trichocarpa	Chr15	13	CH_ptr_165	7	16	0.0000000000162777
Populus trichocarpa	Chr19	13	CH_ptr_218	6	13	0.00000000153627
Populus trichocarpa	Chr19	13	CH_ptr_400	7	70	0.00000158161
Populus trichocarpa	scaffold_39	13	CH_ptr_437	4	6	0.00000508325
Prunus persica	scaffold_1	13	CH_ppe_285	7	51	0.0000000760224
Prunus persica	scaffold_8	13	CH_ppe_71	8	10	4.50001e-17
Prunus persica	scaffold_8	14	CH_ppe_88	10	196	0.0000000279327
Solanum lycopersicum	ch04	13	CH_sly_269	4	6	0.000000126932
Solanum tuberosum	chr04	13	CH_stu_165	7	11	0.0000000000000237964
Solanum tuberosum	chr04	13	CH_stu_166	7	11	0.0000000000000237964
Solanum tuberosum	chr04	14	CH_stu_69	14	115	1.22503e-20
Theobroma cacao	scaffold_1	13	CH_tca_296	4	6	0.000000838339
Theobroma cacao	scaffold_10r	13	CH_tca_297	4	6	0.000000838339
Theobroma cacao	scaffold_9	13	CH_tca_652	3	6	0.000992863
Vitis vinifera	chr10	13	CH_vvi_271	5	11	0.000000188315
Vitis vinifera	chr11	13	CH_vvi_142	6	9	0.0000000000556037
Vitis vinifera	chr12	13	CH_vvi_257	6	26	0.000000148835
Vitis vinifera	chr12_random	13	CH_vvi_512	3	3	0.000146761

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V