PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00010	13	CH_atr_180	5	50	0.000000154863
Citrullus lanatus	Chr9	13	CH_cla_398	3	12	0.000393414
Citrullus lanatus	Chr9	15	CH_cla_9	3	12	0.000393414
Eucalyptus grandis	scaffold_2	13	CH_egr_1027	3	10	0.0000736431
Eucalyptus grandis	scaffold_9	13	CH_egr_897	3	6	0.0000122828
Gossypium raimondii	Chr12	13	CH_gra_310	4	15	0.00000301403
Manihot esculenta	scaffold11341	13	CH_mes_174	4	14	0.00000465024
Medicago truncatula	chr7	13	CH_mtr_852	4	68	0.000069996
Medicago truncatula	chr7	15	CH_mtr_9	4	68	0.0000500365
Populus trichocarpa	Chr17	13	CH_ptr_455	4	24	0.00000931913
Prunus persica	scaffold_3	13	CH_ppe_715	3	19	0.000632445
Prunus persica	scaffold_3	15	CH_ppe_11	3	19	0.000632445
Solanum lycopersicum	ch02	13	CH_sly_278	4	12	0.000000200169
Solanum lycopersicum	ch02	15	CH_sly_16	3	12	0.000238512
Solanum tuberosum	chr02	13	CH_stu_497	4	13	0.000000538967
Solanum tuberosum	chr02	15	CH_stu_20	3	13	0.000504813
Thellungiella parvula	ch3-1	13	CH_tpa_145	3	3	0.00000208415
Theobroma cacao	scaffold_4	13	CH_tca_351	4	29	0.00000471756
Vitis vinifera	chr14	13	CH_vvi_260	4	14	0.000000160692
Vitis vinifera	chr14	15	CH_vvi_5	3	14	0.000172624

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V