PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	13	CH_aly_302	3	3	0.0000057943
Arabidopsis thaliana	2	13	CH_ath_99	5	8	0.000000000061235
Beta vulgaris	Bvchr6.sca027	13	CH_bvu_159	4	6	0.000000196071
Capsella rubella	scaffold_2	13	CH_cru_33	7	7	1.81125e-18
Capsella rubella	scaffold_5	13	CH_cru_89	5	5	0.00000000000518028
Fragaria vesca	LG7	13	CH_fve_501	3	14	0.000164149
Malus domestica	16	13	CH_mdo_191	3	3	0.00000116334
Medicago truncatula	chr3	13	CH_mtr_450	4	5	0.0000000706428
Solanum lycopersicum	ch07	13	CH_sly_145	5	6	0.0000000000479028
Solanum tuberosum	chr07	13	CH_stu_20	16	37	2.24335e-35
Solanum tuberosum	chr07	13	CH_stu_426	7	77	0.0000000629025
Solanum tuberosum	chr07	14	CH_stu_21	16	37	2.24335e-35
Zea mays	3	13	CH_zma_280	3	4	0.0000268657
Zea mays	4	13	CH_zma_119	4	5	0.0000000168898

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V