PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	13	CH_aly_254	4	13	0.00000128084
Arabidopsis lyrata	scaffold_8	13	CH_aly_291	3	3	0.00000406617
Arabidopsis thaliana	3	13	CH_ath_95	5	9	0.0000000000517518
Arabidopsis thaliana	5	13	CH_ath_273	3	3	0.00000297592
Beta vulgaris	Bvchr6.sca005	13	CH_bvu_510	2	2	0.000965624
Capsella rubella	scaffold_5	13	CH_cru_51	6	6	0.00000000000000108226
Capsella rubella	scaffold_7	13	CH_cru_147	4	4	0.00000000408206
Eucalyptus grandis	scaffold_7	13	CH_egr_969	3	4	0.0000470859
Eucalyptus grandis	scaffold_8	13	CH_egr_376	5	5	0.00000000000464428
Eucalyptus grandis	scaffold_8	13	CH_egr_377	5	5	0.00000000000464428
Eucalyptus grandis	scaffold_9	13	CH_egr_462	5	8	0.000000000259677
Fragaria vesca	LG2	13	CH_fve_108	6	29	0.0000000000245792
Gossypium raimondii	Chr03	13	CH_gra_60	6	6	2.9426e-17
Physcomitrella patens	scaffold_29	13	CH_ppa_71	2	3	0.000198327
Physcomitrella patens	scaffold_29	15	CH_ppa_6	2	3	0.000198327
Prunus persica	scaffold_8	13	CH_ppe_409	3	5	0.00000436352

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V