PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_3	13	CH_egr_1054	3	3	0.000106637
Eucalyptus grandis	scaffold_3	13	CH_egr_1204	3	4	0.000426089
Glycine max	Gm05	13	CH_gma_215	5	6	0.00000000311261
Gossypium raimondii	Chr08	13	CH_gra_185	5	6	0.00000000279263
Prunus persica	scaffold_1	13	CH_ppe_488	3	3	0.0000466433
Solanum tuberosum	chr07	13	CH_stu_445	4	4	0.000000117299
Theobroma cacao	scaffold_9	13	CH_tca_543	3	4	0.000216468
Vitis vinifera	chr4	13	CH_vvi_365	4	7	0.00000450875
Zea mays	5	13	CH_zma_20	9	11	2.49295e-18
Zea mays	9	14	CH_zma_14	10	37	0.0000000000000310678

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V