PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	13	CH_aly_32	8	11	3.24446e-19
Arabidopsis lyrata	scaffold_6	13	CH_aly_205	4	6	0.000000169139
Arabidopsis thaliana	1	13	CH_ath_16	10	18	3.3199e-24
Arabidopsis thaliana	4	13	CH_ath_303	3	3	0.00000941136
Arabidopsis thaliana	1	14	CH_ath_13	10	18	3.3199e-24
Capsella rubella	scaffold_1	13	CH_cru_53	6	6	0.00000000000000158177
Capsella rubella	scaffold_6	13	CH_cru_151	4	4	0.00000000517061
Citrullus lanatus	Chr10	13	CH_cla_184	3	3	0.00000179305
Cucumis melo	CM3.5_scaffold00011	13	CH_cme_176	3	3	0.00000105472
Medicago truncatula	chr4	13	CH_mtr_385	4	12	0.0000000141389
Solanum lycopersicum	ch06	13	CH_sly_232	4	9	0.0000000235384
Solanum tuberosum	chr06	13	CH_stu_84	8	12	2.28309e-20
Thellungiella parvula	ch1-1	13	CH_tpa_63	4	5	0.00000000372577

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V