PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: InterPro domain
Identifier: IPR006139
Description: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Chlamydomonas reinhardtii	chromosome_7	13	CH_cre_54	3	5	0.00000382221
Citrullus lanatus	Chr5	13	CH_cla_98	5	12	0.000000000400387
Citrullus lanatus	Chr9	13	CH_cla_196	3	3	0.00000310795
Citrus sinensis	scaffold00096	13	CH_csi_71	4	4	0.00000000230723
Cucumis melo	CM3.5_scaffold00006	13	CH_cme_156	4	12	0.000000219373
Eucalyptus grandis	scaffold_10	13	CH_egr_877	3	3	0.00000906866
Eucalyptus grandis	scaffold_5	13	CH_egr_146	8	11	5.91919e-20
Fragaria vesca	LG7	13	CH_fve_278	3	3	0.00000088742
Glycine max	Gm07	13	CH_gma_183	4	4	0.000000000465022
Manihot esculenta	scaffold03942	13	CH_mes_132	3	3	0.000000756743
Medicago truncatula	chr4	13	CH_mtr_261	5	14	0.0000000000580204
Medicago truncatula	chr8	13	CH_mtr_563	3	3	0.000000790601
Oryza sativa ssp. japonica	4	13	CH_osa_254	4	8	0.000000013014
Ricinus communis	30146	13	CH_rco_213	3	3	0.0000031823
Solanum lycopersicum	ch03	13	CH_sly_341	3	3	0.00000179736
Solanum tuberosum	chr03	13	CH_stu_560	3	3	0.00000272267
Theobroma cacao	scaffold_3	13	CH_tca_345	3	3	0.00000390385
Zea mays	10	13	CH_zma_149	4	8	0.00000012925

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V