PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR005630
Description: Terpene synthase, metal-binding domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00043	13	CH_atr_203	4	7	0.000000458211
Arabidopsis lyrata	scaffold_4	13	CH_aly_192	4	5	0.0000000662218
Citrullus lanatus	Chr2	13	CH_cla_38	7	11	7.64777e-16
Citrullus lanatus	Chr3	13	CH_cla_214	3	3	0.0000123883
Citrus sinensis	scaffold00010	13	CH_csi_208	3	3	0.0000309858
Cucumis melo	CM3.5_scaffold00028	13	CH_cme_34	8	11	6.303e-18
Cucumis melo	CM3.5_scaffold00059	13	CH_cme_14	11	15	3.10763e-26
Cucumis melo	CM3.5_scaffold00059	14	CH_cme_14	11	15	3.10763e-26
Eucalyptus grandis	scaffold_4	13	CH_egr_552	6	13	0.00000000523003
Fragaria vesca	LG5	13	CH_fve_378	4	10	0.0000239738
Fragaria vesca	LG5	13	CH_fve_584	3	4	0.000348482
Gossypium raimondii	Chr06	13	CH_gra_99	7	10	0.000000000000170547
Gossypium raimondii	Chr07	13	CH_gra_12	16	20	2.17901e-37
Gossypium raimondii	Chr07	14	CH_gra_13	16	20	2.17901e-37
Lotus japonicus	chr4	13	CH_lja_197	3	10	0.0000682481
Malus domestica	10	13	CH_mdo_209	4	11	0.00000230477
Malus domestica	11	13	CH_mdo_171	4	9	0.000000880856
Malus domestica	12	13	CH_mdo_121	4	6	0.000000105016
Oryza sativa ssp. japonica	2	13	CH_osa_230	6	26	0.00000000469673
Populus trichocarpa	Chr07	13	CH_ptr_560	3	3	0.0000822221
Populus trichocarpa	Chr19	13	CH_ptr_230	5	7	0.00000000251341
Populus trichocarpa	Chr19	13	CH_ptr_131	7	14	0.000000000000548012
Populus trichocarpa	Chr19	14	CH_ptr_76	14	299	0.0000000000000237696
Ricinus communis	30206	15	CH_rco_11	3	9	0.000823445
Solanum lycopersicum	ch01	13	CH_sly_173	5	6	0.000000000667834
Solanum lycopersicum	ch01	13	CH_sly_26	10	12	1.28337e-23
Solanum lycopersicum	ch08	13	CH_sly_419	4	9	0.0000115931
Solanum lycopersicum	ch01	14	CH_sly_23	10	12	1.28337e-23
Solanum tuberosum	chr06	13	CH_stu_284	9	52	0.000000000194977
Solanum tuberosum	chr08	13	CH_stu_1013	3	3	0.000463263
Solanum tuberosum	chr06	14	CH_stu_104	13	154	0.00000000000221655
Theobroma cacao	scaffold_6	13	CH_tca_105	6	9	0.00000000000645304
Vitis vinifera	chr12	13	CH_vvi_272	6	18	0.00000021386
Vitis vinifera	chr13_random	13	CH_vvi_647	3	3	0.000596514
Vitis vinifera	chr18_random	13	CH_vvi_1	30	44	1.8785e-64
Vitis vinifera	chr19	13	CH_vvi_116	7	9	0.00000000000111726
Vitis vinifera	chr18_random	14	CH_vvi_1	35	54	3.71458e-75
Vitis vinifera	chr19	14	CH_vvi_80	10	197	0.00000652525

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V