PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	13	CH_aly_400	3	5	0.0000794568
Arabidopsis thaliana	2	13	CH_ath_519	4	50	0.000438443
Brassica rapa	A04	13	CH_bra_97	6	76	0.0000000116582
Citrus sinensis	scaffold00246	13	CH_csi_148	3	4	0.00000160935
Cucumis melo	CM3.5_scaffold00005	13	CH_cme_237	4	58	0.0000396195
Eucalyptus grandis	scaffold_9	13	CH_egr_483	5	25	0.000000000583702
Glycine max	Gm01	13	CH_gma_149	4	4	0.0000000000319133
Gossypium raimondii	Chr08	13	CH_gra_341	3	8	0.00000838837
Malus domestica	1	13	CH_mdo_535	2	2	0.000461585
Malus domestica	1	15	CH_mdo_21	2	2	0.000461585
Medicago truncatula	chr5	13	CH_mtr_287	4	7	0.000000000212193
Prunus persica	scaffold_2	13	CH_ppe_624	4	71	0.000226119
Prunus persica	scaffold_6	13	CH_ppe_753	3	18	0.000760678
Solanum lycopersicum	ch02	13	CH_sly_200	4	9	0.00000000499472
Solanum tuberosum	chr11	13	CH_stu_1101	2	2	0.000853971
Theobroma cacao	scaffold_3	13	CH_tca_242	3	6	0.000000139409
Theobroma cacao	scaffold_3	15	CH_tca_15	2	5	0.00068164
Zea mays	8	13	CH_zma_391	2	2	0.000150875

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V