PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00012	13	CH_atr_115	4	9	0.000000000932889
Beta vulgaris	Bvchr2.sca001	13	CH_bvu_48	5	6	0.000000000000493003
Citrus sinensis	scaffold00021	13	CH_csi_310	2	2	0.000347443
Fragaria vesca	scf0513178	13	CH_fve_29	7	11	9.4848e-19
Gossypium raimondii	Chr11	13	CH_gra_353	4	28	0.0000127089
Manihot esculenta	scaffold09492	13	CH_mes_118	3	3	0.000000270265
Medicago truncatula	chr2	13	CH_mtr_562	3	3	0.000000790601
Medicago truncatula	chr3	13	CH_mtr_375	4	8	0.000000011029
Physcomitrella patens	scaffold_228	13	CH_ppa_53	2	2	0.0000661113
Prunus persica	scaffold_6	13	CH_ppe_290	3	3	0.0000000779466
Thellungiella parvula	ch5-3	13	CH_tpa_131	4	15	0.00000101415
Vitis vinifera	chr11	13	CH_vvi_678	2	2	0.000752106
Vitis vinifera	chr13	13	CH_vvi_679	2	2	0.000752106

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V