PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00041	15	CH_atr_12	3	3	0.000195138
Citrullus lanatus	Chr5	14	CH_cla_24	11	197	0.00000953605
Eucalyptus grandis	scaffold_11	13	CH_egr_286	9	11	0.0000000000000334318
Eucalyptus grandis	scaffold_11	13	CH_egr_401	7	7	0.0000000000155062
Eucalyptus grandis	scaffold_3	13	CH_egr_1020	4	4	0.0000600139
Eucalyptus grandis	scaffold_6	13	CH_egr_578	6	7	0.0000000170263
Eucalyptus grandis	scaffold_9	13	CH_egr_234	11	19	0.00000000000000172753
Eucalyptus grandis	scaffold_9	14	CH_egr_153	11	19	0.00000000000000172753
Medicago truncatula	chr1	13	CH_mtr_391	6	10	0.0000000157873
Medicago truncatula	chr8	13	CH_mtr_144	8	9	0.00000000000000691202
Solanum lycopersicum	ch03	13	CH_sly_451	4	4	0.0000267673
Solanum lycopersicum	ch11	13	CH_sly_452	4	4	0.0000267673
Solanum tuberosum	chr06	13	CH_stu_731	5	9	0.0000498906
Solanum tuberosum	chr06	14	CH_stu_149	10	115	0.000170385

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V