PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR004853
Description: Triose-phosphate transporter domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00135	13	CH_atr_160	4	4	0.0000000351824
Arabidopsis lyrata	scaffold_6	13	CH_aly_595	3	4	0.000817366
Arabidopsis lyrata	scaffold_7	13	CH_aly_128	5	5	0.000000000651029
Arabidopsis thaliana	1	13	CH_ath_423	3	3	0.000172758
Arabidopsis thaliana	4	13	CH_ath_68	6	6	0.000000000000757535
Beta vulgaris	Bvchr5.sca006	13	CH_bvu_293	3	3	0.0000836989
Brassica rapa	A01	13	CH_bra_415	3	3	0.000364812
Capsella rubella	scaffold_7	13	CH_cru_83	6	6	0.0000000000015057
Carica papaya	supercontig_14	13	CH_cpa_101	4	4	0.000000278029
Carica papaya	supercontig_77	13	CH_cpa_128	4	5	0.00000138808
Citrullus lanatus	Chr3	13	CH_cla_328	3	3	0.000115842
Citrus sinensis	scaffold00007	13	CH_csi_227	3	3	0.0000904423
Cucumis melo	CM3.5_scaffold00001	13	CH_cme_313	3	3	0.000100901
Eucalyptus grandis	scaffold_4	13	CH_egr_163	8	8	5.51288e-19
Eucalyptus grandis	scaffold_6	13	CH_egr_668	4	4	0.000000162001
Fragaria vesca	LG3	13	CH_fve_217	4	4	0.0000000475463
Glycine max	Gm09	13	CH_gma_674	3	3	0.000302774
Gossypium raimondii	Chr09	13	CH_gra_528	3	3	0.000338622
Lotus japonicus	chr1	13	CH_lja_308	3	7	0.000864631
Malus domestica	10	13	CH_mdo_117	4	4	0.0000000679515
Oryza sativa ssp. japonica	4	13	CH_osa_537	3	3	0.0000351865
Prunus persica	scaffold_4	13	CH_ppe_564	3	3	0.000118323
Prunus persica	scaffold_8	13	CH_ppe_565	3	3	0.000118323
Solanum lycopersicum	ch02	13	CH_sly_132	6	7	0.00000000000975951
Solanum lycopersicum	ch10	13	CH_sly_637	3	3	0.000236546
Solanum tuberosum	chr02	13	CH_stu_245	6	7	0.0000000000174257
Solanum tuberosum	chr06	13	CH_stu_568	4	5	0.00000317989
Solanum tuberosum	chr10	13	CH_stu_954	3	3	0.000315169
Solanum tuberosum	chr12	13	CH_stu_951	4	12	0.000311252
Solanum tuberosum	chr12	13	CH_stu_268	8	32	0.0000000000929847
Thellungiella parvula	ch1-1	13	CH_tpa_248	3	3	0.000221924
Thellungiella parvula	ch7-4	13	CH_tpa_52	5	5	0.000000000858605
Theobroma cacao	scaffold_6	13	CH_tca_174	5	6	0.0000000022804
Theobroma cacao	scaffold_6	13	CH_tca_501	3	3	0.000145174

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V