PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	13	CH_aly_441	3	4	0.000185693
Arabidopsis thaliana	1	13	CH_ath_333	3	3	0.0000263582
Capsella rubella	scaffold_1	13	CH_cru_359	3	3	0.0000476768
Carica papaya	supercontig_142	13	CH_cpa_179	3	3	0.0000217729
Citrus sinensis	scaffold00012	13	CH_csi_133	4	5	0.000000637876
Fragaria vesca	LG2	13	CH_fve_498	3	5	0.000157136
Glycine max	Gm03	13	CH_gma_689	3	4	0.00035848
Medicago truncatula	chr3	13	CH_mtr_257	5	6	0.0000000000432718
Medicago truncatula	chr3	13	CH_mtr_713	5	45	0.00000863641
Oryza sativa ssp. japonica	2	13	CH_osa_115	7	26	0.000000000000570512
Solanum lycopersicum	ch12	13	CH_sly_293	5	19	0.000000303637
Solanum tuberosum	chr12	13	CH_stu_492	5	20	0.000000455345
Theobroma cacao	scaffold_8	13	CH_tca_331	4	9	0.00000209496
Zea mays	5	13	CH_zma_87	5	8	0.00000000176418

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V