PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_8	13	CH_cpa_207	3	4	0.0000870272
Carica papaya	supercontig_9	13	CH_cpa_129	4	8	0.0000014016
Citrus sinensis	scaffold00348	13	CH_csi_74	5	9	0.00000000344933
Eucalyptus grandis	scaffold_10	13	CH_egr_1069	3	4	0.000172654
Fragaria vesca	LG6	13	CH_fve_626	3	3	0.000458877
Gossypium raimondii	Chr11	13	CH_gra_374	3	3	0.0000280261
Malus domestica	10	13	CH_mdo_417	3	5	0.000174184
Populus trichocarpa	Chr07	13	CH_ptr_152	6	9	0.00000000000620209
Prunus persica	scaffold_1	13	CH_ppe_239	7	21	0.00000000299559
Prunus persica	scaffold_3	13	CH_ppe_711	3	3	0.00057018
Prunus persica	scaffold_3	13	CH_ppe_710	3	3	0.00057018
Prunus persica	scaffold_8	13	CH_ppe_369	4	4	0.00000152086
Ricinus communis	30178	13	CH_rco_218	3	3	0.00000526526
Theobroma cacao	scaffold_1	13	CH_tca_442	3	3	0.0000541659
Theobroma cacao	scaffold_4	13	CH_tca_90	7	17	0.00000000000156875
Theobroma cacao	scaffold_6	13	CH_tca_443	3	3	0.0000541659
Vitis vinifera	chr5	13	CH_vvi_249	5	24	0.0000000866783

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V