PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00025	13	CH_csi_174	3	6	0.00000804372
Cucumis melo	CM3.5_scaffold00017	13	CH_cme_167	3	3	0.000000492202
Eucalyptus grandis	scaffold_3	13	CH_egr_698	3	3	0.000000286756
Gossypium raimondii	Chr09	13	CH_gra_271	3	3	0.000000513848
Medicago truncatula	chr2	13	CH_mtr_282	4	5	0.000000000142918
Ostreococcus lucimarinus	Chr_7	13	CH_olu_91	2	2	0.000768738
Prunus persica	scaffold_1	13	CH_ppe_452	3	7	0.0000152671
Solanum lycopersicum	ch06	13	CH_sly_313	3	3	0.000000592536
Theobroma cacao	scaffold_9	13	CH_tca_362	3	6	0.00000780391

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V