PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR004294
Description: Carotenoid oxygenase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00056	13	CH_atr_63	5	5	0.000000000000586034
Citrus sinensis	scaffold00005	13	CH_csi_284	3	10	0.000289004
Eucalyptus grandis	scaffold_3	13	CH_egr_323	6	11	0.000000000000383386
Fragaria vesca	LG2	13	CH_fve_104	5	10	0.0000000000192266
Glycine max	Gm04	13	CH_gma_527	3	7	0.0000402174
Glycine max	Gm06	13	CH_gma_547	3	8	0.0000643351
Malus domestica	2	13	CH_mdo_189	3	3	0.00000116334
Manihot esculenta	scaffold02871	13	CH_mes_88	4	6	0.0000000524778
Manihot esculenta	scaffold05806	13	CH_mes_378	3	9	0.000515008
Medicago truncatula	chr5	13	CH_mtr_652	3	5	0.00000310519
Medicago truncatula	chr8	13	CH_mtr_341	4	8	0.00000000300023
Oryza sativa ssp. japonica	8	13	CH_osa_798	3	17	0.000589424
Physcomitrella patens	scaffold_14	13	CH_ppa_25	3	4	0.00000220251
Populus trichocarpa	Chr01	13	CH_ptr_325	4	6	0.000000174713
Populus trichocarpa	Chr06	13	CH_ptr_416	4	10	0.00000244048
Populus trichocarpa	Chr09	13	CH_ptr_295	4	5	0.0000000582704
Populus trichocarpa	Chr18	13	CH_ptr_43	10	16	4.73414e-24
Populus trichocarpa	Chr18	14	CH_ptr_44	10	16	4.73414e-24
Prunus persica	scaffold_1	13	CH_ppe_265	4	9	0.0000000297057
Ricinus communis	29794	13	CH_rco_255	3	8	0.0000453094
Solanum tuberosum	chr01	13	CH_stu_348	4	4	0.00000000404975
Solanum tuberosum	chr08	13	CH_stu_349	4	4	0.00000000404975
Solanum tuberosum	chr08	13	CH_stu_338	5	13	0.00000000266157
Solanum tuberosum	chr08	13	CH_stu_626	3	3	0.00000748735
Theobroma cacao	scaffold_3	13	CH_tca_645	3	10	0.000808095
Theobroma cacao	scaffold_9	13	CH_tca_222	4	6	0.0000000552146
Theobroma cacao	scaffold_9	13	CH_tca_318	4	11	0.00000121203
Vitis vinifera	chr4	13	CH_vvi_251	4	9	0.000000114819

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V