Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR004265
- Description
- Plant disease resistance response protein
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00034 | 13 | CH_atr_451 | 3 | 4 | 0.000369895 |
Amborella trichopoda | scaffold00041 | 13 | CH_atr_1 | 24 | 29 | 2.48239e-62 |
Amborella trichopoda | scaffold00134 | 13 | CH_atr_84 | 6 | 9 | 0.0000000000223021 |
Amborella trichopoda | scaffold00041 | 14 | CH_atr_2 | 24 | 29 | 2.48239e-62 |
Arabidopsis lyrata | scaffold_3 | 13 | CH_aly_328 | 3 | 3 | 0.0000155471 |
Arabidopsis lyrata | scaffold_6 | 13 | CH_aly_180 | 4 | 5 | 0.0000000564126 |
Arabidopsis thaliana | 3 | 13 | CH_ath_320 | 3 | 3 | 0.0000155439 |
Arabidopsis thaliana | 4 | 13 | CH_ath_395 | 3 | 4 | 0.0000621404 |
Beta vulgaris | 0008.scaffold00029 | 13 | CH_bvu_133 | 4 | 4 | 0.0000000161686 |
Beta vulgaris | Bvchr4.sca001 | 13 | CH_bvu_245 | 3 | 3 | 0.0000186029 |
Beta vulgaris | Bvchr9.sca025 | 13 | CH_bvu_63 | 5 | 5 | 0.0000000000132728 |
Brassica rapa | A01 | 13 | CH_bra_286 | 3 | 3 | 0.0000337554 |
Brassica rapa | A06 | 13 | CH_bra_287 | 3 | 3 | 0.0000337554 |
Carica papaya | supercontig_85 | 13 | CH_cpa_19 | 6 | 6 | 0.0000000000000024026 |
Citrullus lanatus | Chr7 | 13 | CH_cla_453 | 3 | 7 | 0.00058421 |
Citrus sinensis | scaffold00009 | 13 | CH_csi_182 | 3 | 3 | 0.0000112676 |
Citrus sinensis | scaffold00043 | 13 | CH_csi_93 | 5 | 17 | 0.0000000362265 |
Cucumis melo | CM3.5_scaffold00022 | 13 | CH_cme_125 | 4 | 4 | 0.00000000984367 |
Eucalyptus grandis | scaffold_1 | 13 | CH_egr_1025 | 3 | 3 | 0.000072662 |
Eucalyptus grandis | scaffold_1 | 13 | CH_egr_83 | 10 | 10 | 1.79581e-25 |
Eucalyptus grandis | scaffold_4 | 13 | CH_egr_644 | 4 | 4 | 0.0000000891584 |
Eucalyptus grandis | scaffold_5 | 13 | CH_egr_207 | 7 | 7 | 1.42221e-16 |
Eucalyptus grandis | scaffold_1 | 14 | CH_egr_80 | 10 | 10 | 1.79581e-25 |
Fragaria vesca | LG1 | 13 | CH_fve_190 | 7 | 49 | 0.00000000964899 |
Fragaria vesca | LG2 | 13 | CH_fve_158 | 5 | 7 | 0.00000000194552 |
Fragaria vesca | LG3 | 13 | CH_fve_44 | 7 | 8 | 9.35227e-16 |
Fragaria vesca | LG5 | 13 | CH_fve_118 | 5 | 5 | 0.0000000000928253 |
Fragaria vesca | LG6 | 13 | CH_fve_575 | 3 | 4 | 0.000265248 |
Fragaria vesca | LG7 | 13 | CH_fve_455 | 3 | 3 | 0.0000663736 |
Fragaria vesca | LG1 | 15 | CH_fve_35 | 4 | 47 | 0.000546834 |
Glycine max | Gm01 | 13 | CH_gma_246 | 5 | 11 | 0.0000000224868 |
Glycine max | Gm03 | 13 | CH_gma_70 | 7 | 9 | 0.00000000000000147413 |
Glycine max | Gm03 | 13 | CH_gma_158 | 5 | 5 | 0.0000000000489038 |
Glycine max | Gm11 | 13 | CH_gma_734 | 3 | 5 | 0.00053795 |
Glycine max | Gm19 | 13 | CH_gma_157 | 5 | 5 | 0.0000000000489038 |
Gossypium raimondii | Chr02 | 13 | CH_gra_152 | 5 | 5 | 0.000000000466063 |
Gossypium raimondii | Chr02 | 13 | CH_gra_197 | 5 | 7 | 0.0000000097611 |
Gossypium raimondii | Chr09 | 13 | CH_gra_43 | 9 | 9 | 2.59432e-21 |
Gossypium raimondii | Chr11 | 13 | CH_gra_494 | 3 | 3 | 0.000178408 |
Gossypium raimondii | Chr11 | 13 | CH_gra_495 | 3 | 3 | 0.000178408 |
Lotus japonicus | chr4 | 13 | CH_lja_115 | 3 | 3 | 0.00000246771 |
Manihot esculenta | scaffold05280 | 13 | CH_mes_209 | 3 | 3 | 0.0000208104 |
Manihot esculenta | scaffold08542 | 13 | CH_mes_369 | 3 | 6 | 0.000415306 |
Medicago truncatula | chr4 | 13 | CH_mtr_54 | 10 | 18 | 1.84621e-23 |
Medicago truncatula | chr4 | 13 | CH_mtr_1101 | 3 | 6 | 0.000373408 |
Medicago truncatula | chr7 | 13 | CH_mtr_320 | 5 | 9 | 0.000000000907308 |
Medicago truncatula | chr4 | 14 | CH_mtr_57 | 10 | 18 | 1.84621e-23 |
Oryza sativa ssp. japonica | 10 | 13 | CH_osa_535 | 4 | 12 | 0.0000349744 |
Oryza sativa ssp. japonica | 11 | 13 | CH_osa_137 | 6 | 9 | 0.00000000000605542 |
Oryza sativa ssp. japonica | 11 | 13 | CH_osa_125 | 7 | 17 | 0.00000000000136753 |
Oryza sativa ssp. japonica | 7 | 13 | CH_osa_222 | 6 | 20 | 0.00000000276786 |
Oryza sativa ssp. japonica | 7 | 13 | CH_osa_437 | 4 | 8 | 0.00000496235 |
Physcomitrella patens | scaffold_252 | 13 | CH_ppa_27 | 3 | 5 | 0.00000367036 |
Populus trichocarpa | Chr01 | 13 | CH_ptr_320 | 4 | 5 | 0.000000152297 |
Populus trichocarpa | Chr01 | 13 | CH_ptr_511 | 3 | 3 | 0.0000340013 |
Populus trichocarpa | Chr03 | 13 | CH_ptr_509 | 3 | 3 | 0.0000340013 |
Populus trichocarpa | Chr03 | 13 | CH_ptr_319 | 4 | 5 | 0.000000152297 |
Populus trichocarpa | Chr09 | 13 | CH_ptr_510 | 3 | 3 | 0.0000340013 |
Populus trichocarpa | Chr10 | 13 | CH_ptr_508 | 3 | 3 | 0.0000340013 |
Populus trichocarpa | Chr16 | 13 | CH_ptr_280 | 4 | 4 | 0.0000000304815 |
Prunus persica | scaffold_2 | 13 | CH_ppe_571 | 3 | 4 | 0.000140037 |
Prunus persica | scaffold_2 | 13 | CH_ppe_481 | 3 | 3 | 0.000035037 |
Prunus persica | scaffold_3 | 13 | CH_ppe_341 | 4 | 6 | 0.00000052956 |
Prunus persica | scaffold_5 | 13 | CH_ppe_193 | 5 | 6 | 0.000000000206326 |
Prunus persica | scaffold_6 | 13 | CH_ppe_271 | 4 | 4 | 0.0000000353616 |
Prunus persica | scaffold_8 | 13 | CH_ppe_391 | 4 | 8 | 0.00000246725 |
Ricinus communis | 29756 | 13 | CH_rco_256 | 3 | 4 | 0.0000471854 |
Ricinus communis | 30190 | 13 | CH_rco_231 | 3 | 3 | 0.0000118034 |
Ricinus communis | 29904 | 15 | CH_rco_9 | 3 | 12 | 0.000697712 |
Solanum lycopersicum | ch02 | 13 | CH_sly_437 | 3 | 3 | 0.0000221954 |
Solanum lycopersicum | ch08 | 13 | CH_sly_436 | 3 | 3 | 0.0000221954 |
Solanum lycopersicum | ch10 | 13 | CH_sly_177 | 6 | 23 | 0.00000000102865 |
Solanum tuberosum | chr08 | 13 | CH_stu_635 | 3 | 3 | 0.00000984051 |
Theobroma cacao | scaffold_10r | 13 | CH_tca_438 | 3 | 3 | 0.0000497741 |
Theobroma cacao | scaffold_2 | 13 | CH_tca_17 | 11 | 12 | 6.09646e-28 |
Theobroma cacao | scaffold_3 | 13 | CH_tca_269 | 4 | 5 | 0.0000002797 |
Theobroma cacao | scaffold_5 | 13 | CH_tca_111 | 6 | 10 | 0.0000000000135054 |
Theobroma cacao | scaffold_2 | 14 | CH_tca_17 | 11 | 12 | 6.09646e-28 |
Vitis vinifera | chr12 | 13 | CH_vvi_388 | 3 | 3 | 0.00000692398 |
Vitis vinifera | chr6 | 13 | CH_vvi_235 | 4 | 6 | 0.0000000585358 |
Vitis vinifera | chr8 | 13 | CH_vvi_236 | 4 | 6 | 0.0000000585358 |
Zea mays | 7 | 13 | CH_zma_299 | 3 | 3 | 0.0000468215 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |