PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR004263
Description: Exostosin-like

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00046	13	CH_atr_301	4	12	0.0000428299
Amborella trichopoda	scaffold00056	13	CH_atr_310	3	3	0.0000669043
Fragaria vesca	LG4	13	CH_fve_264	4	5	0.00000057384
Fragaria vesca	scf0513168	13	CH_fve_677	3	5	0.000870317
Glycine max	Gm06	13	CH_gma_665	3	3	0.000249475
Glycine max	Gm13	13	CH_gma_187	5	5	0.000000000653751
Glycine max	Gm17	13	CH_gma_188	5	5	0.000000000653751
Lotus japonicus	chr1	13	CH_lja_61	4	5	0.0000000272656
Malus domestica	9	13	CH_mdo_116	4	4	0.0000000679515
Manihot esculenta	scaffold05806	13	CH_mes_300	3	3	0.00017897
Oryza sativa ssp. japonica	1	13	CH_osa_507	3	3	0.0000235691
Oryza sativa ssp. japonica	10	13	CH_osa_409	4	9	0.00000211328
Oryza sativa ssp. japonica	3	13	CH_osa_769	3	6	0.0004706
Physcomitrella patens	scaffold_195	13	CH_ppa_96	3	3	0.000247958
Populus trichocarpa	Chr06	13	CH_ptr_358	4	4	0.000000403362
Populus trichocarpa	Chr07	13	CH_ptr_412	5	15	0.00000205168
Populus trichocarpa	Chr18	13	CH_ptr_643	3	3	0.000231398
Prunus persica	scaffold_1	13	CH_ppe_144	7	13	0.00000000000496713
Prunus persica	scaffold_4	13	CH_ppe_625	3	3	0.000228072
Prunus persica	scaffold_6	13	CH_ppe_626	3	3	0.000228072
Prunus persica	scaffold_7	13	CH_ppe_627	3	3	0.000228072
Solanum lycopersicum	ch08	13	CH_sly_554	3	3	0.000096781
Solanum tuberosum	chr08	13	CH_stu_948	3	4	0.000294936
Theobroma cacao	scaffold_5	13	CH_tca_314	4	5	0.00000109312
Theobroma cacao	scaffold_9	13	CH_tca_497	3	3	0.000136635
Theobroma cacao	scaffold_9	13	CH_tca_496	3	3	0.000136635
Vitis vinifera	chr11	13	CH_vvi_231	5	11	0.0000000480384
Zea mays	1	13	CH_zma_83	5	6	0.00000000143974
Zea mays	1	13	CH_zma_235	4	7	0.00000605853
Zea mays	2	13	CH_zma_70	5	5	0.000000000240235

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V