PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00022	13	CH_atr_415	2	2	0.000237107
Arabidopsis thaliana	1	13	CH_ath_220	5	7	0.000000607657
Arabidopsis thaliana	2	13	CH_ath_93	7	10	0.0000000000490523
Arabidopsis thaliana	3	13	CH_ath_192	5	6	0.00000017417
Arabidopsis thaliana	3	13	CH_ath_344	4	7	0.0000381025
Arabidopsis thaliana	4	13	CH_ath_271	8	59	0.00000287622
Arabidopsis thaliana	5	13	CH_ath_345	4	5	0.0000381025
Arabidopsis thaliana	5	13	CH_ath_297	4	4	0.00000764402
Arabidopsis thaliana	4	14	CH_ath_43	10	157	0.0000237862
Brassica rapa	A05	13	CH_bra_113	4	4	0.0000000410311
Capsella rubella	scaffold_6	14	CH_cru_58	10	248	0.000329718
Carica papaya	supercontig_89	13	CH_cpa_17	7	13	3.87775e-16
Carica papaya	supercontig_189	15	CH_cpa_20	2	2	0.000582496
Cucumis melo	CM3.5_scaffold00002	13	CH_cme_123	4	5	0.00000000918084
Gossypium raimondii	Chr05	13	CH_gra_36	11	22	1.63516e-23
Gossypium raimondii	Chr11	13	CH_gra_221	4	4	0.0000000463407
Medicago truncatula	chr7	13	CH_mtr_338	4	16	0.00000000236376
Thellungiella parvula	ch4-6	13	CH_tpa_179	3	4	0.0000212113
Theobroma cacao	scaffold_5	13	CH_tca_493	3	5	0.000125247

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V