PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR004046
Description: Glutathione S-transferase, C-terminal

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00001	13	CH_atr_358	3	4	0.0000861476
Amborella trichopoda	scaffold00057	13	CH_atr_94	5	6	0.0000000000932495
Arabidopsis lyrata	scaffold_1	13	CH_aly_175	4	4	0.0000000308998
Arabidopsis thaliana	1	13	CH_ath_135	5	8	0.00000000170753
Arabidopsis thaliana	1	13	CH_ath_173	4	5	0.0000000331249
Beta vulgaris	Bvchr6.sca028	13	CH_bvu_122	4	4	0.0000000130889
Brassica rapa	A10	13	CH_bra_132	4	4	0.000000107343
Carica papaya	supercontig_59	13	CH_cpa_190	3	3	0.000032518
Carica papaya	supercontig_73	13	CH_cpa_304	3	4	0.000129961
Carica papaya	supercontig_77	13	CH_cpa_136	4	8	0.00000242268
Citrullus lanatus	Chr4	13	CH_cla_35	8	15	2.80136e-16
Citrullus lanatus	Chr4	13	CH_cla_236	3	3	0.0000397079
Citrullus lanatus	Chr7	13	CH_cla_135	4	4	0.0000000439396
Citrullus lanatus	Chr9	13	CH_cla_136	4	4	0.0000000439396
Citrus sinensis	scaffold00026	13	CH_csi_204	3	3	0.0000267605
Cucumis melo	CM3.5_scaffold00002	13	CH_cme_88	6	14	0.0000000000838453
Cucumis melo	CM3.5_scaffold00026	13	CH_cme_130	4	4	0.0000000319613
Cucumis melo	CM3.5_scaffold00027	13	CH_cme_129	4	4	0.0000000319613
Eucalyptus grandis	scaffold_11	13	CH_egr_670	5	8	0.000000169459
Eucalyptus grandis	scaffold_11	13	CH_egr_191	8	8	3.88705e-17
Eucalyptus grandis	scaffold_11	13	CH_egr_99	11	13	5.30103e-24
Eucalyptus grandis	scaffold_2	13	CH_egr_856	4	5	0.0000063413
Eucalyptus grandis	scaffold_6	13	CH_egr_1230	3	3	0.000524047
Eucalyptus grandis	scaffold_7	13	CH_egr_1231	3	3	0.000524047
Eucalyptus grandis	scaffold_8	13	CH_egr_215	8	9	3.49115e-16
Eucalyptus grandis	scaffold_11	14	CH_egr_92	11	13	5.30103e-24
Fragaria vesca	LG2	13	CH_fve_205	4	4	0.0000000298721
Glycine max	Gm05	13	CH_gma_308	4	4	0.000000156343
Glycine max	Gm08	13	CH_gma_604	3	3	0.000122473
Glycine max	Gm18	13	CH_gma_602	3	3	0.000122473
Glycine max	Gm18	13	CH_gma_603	3	3	0.000122473
Gossypium raimondii	Chr12	13	CH_gra_295	4	6	0.00000200562
Gossypium raimondii	Chr13	13	CH_gra_276	4	5	0.000000669258
Lotus japonicus	chr1	13	CH_lja_15	5	6	0.00000000000275989
Malus domestica	13	13	CH_mdo_19	7	12	0.00000000000000925045
Malus domestica	17	13	CH_mdo_204	4	8	0.00000169427
Malus domestica	3	13	CH_mdo_351	3	4	0.000116757
Manihot esculenta	scaffold02196	13	CH_mes_290	3	3	0.000133511
Manihot esculenta	scaffold06916	13	CH_mes_151	4	5	0.0000011706
Oryza sativa ssp. japonica	1	13	CH_osa_81	9	37	0.00000000000000201323
Oryza sativa ssp. japonica	3	13	CH_osa_324	4	5	0.000000199412
Oryza sativa ssp. japonica	1	14	CH_osa_82	10	174	0.000000000062134
Populus trichocarpa	scaffold_36	13	CH_ptr_384	4	5	0.000000902535
Prunus persica	scaffold_2	13	CH_ppe_574	3	3	0.000152775
Prunus persica	scaffold_8	13	CH_ppe_92	7	7	0.00000000000000110422
Ricinus communis	29751	13	CH_rco_12	9	9	6.43724e-22
Ricinus communis	29904	13	CH_rco_183	4	5	0.000000657997
Ricinus communis	30148	13	CH_rco_144	7	55	0.0000000727844
Solanum lycopersicum	ch09	13	CH_sly_5	16	17	3.87948e-41
Solanum lycopersicum	ch12	13	CH_sly_561	3	3	0.000115673
Solanum lycopersicum	ch09	14	CH_sly_6	16	17	3.87948e-41
Solanum tuberosum	chr12	13	CH_stu_844	3	3	0.000158056
Thellungiella parvula	ch1-1	13	CH_tpa_175	3	3	0.0000167774
Theobroma cacao	scaffold_7	13	CH_tca_431	4	10	0.0000419736
Vitis vinifera	chr8	13	CH_vvi_521	3	3	0.000198776
Zea mays	1	13	CH_zma_131	4	4	0.0000000386477

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V