PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR003871
Description: Domain of unknown function DUF223

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	13	CH_aly_57	9	11	0.00000000000000785413
Arabidopsis lyrata	scaffold_2	13	CH_aly_16	14	21	6.60832e-23
Arabidopsis lyrata	scaffold_2	13	CH_aly_18	12	13	2.78495e-22
Arabidopsis lyrata	scaffold_4	13	CH_aly_26	11	12	4.8747e-20
Arabidopsis lyrata	scaffold_5	13	CH_aly_43	10	12	5.02937e-17
Arabidopsis lyrata	scaffold_6	13	CH_aly_27	11	12	4.8747e-20
Arabidopsis lyrata	scaffold_7	13	CH_aly_19	12	13	2.78495e-22
Arabidopsis lyrata	scaffold_8	13	CH_aly_133	6	6	0.000000000916128
Arabidopsis lyrata	scaffold_9	13	CH_aly_83	8	10	0.00000000000119722
Arabidopsis lyrata	scaffold_1	14	CH_aly_31	12	55	0.00000000000767829
Arabidopsis lyrata	scaffold_2	14	CH_aly_14	30	295	2.24834e-24
Arabidopsis lyrata	scaffold_4	14	CH_aly_21	11	12	4.8747e-20
Arabidopsis lyrata	scaffold_5	14	CH_aly_26	10	12	5.02937e-17
Arabidopsis lyrata	scaffold_6	14	CH_aly_22	11	12	4.8747e-20
Arabidopsis lyrata	scaffold_7	14	CH_aly_17	12	13	2.78495e-22
Arabidopsis lyrata	scaffold_1	15	CH_aly_14	8	55	0.00000304577
Arabidopsis lyrata	scaffold_2	15	CH_aly_1	8	9	0.0000000000000266044
Arabidopsis lyrata	scaffold_2	15	CH_aly_5	7	13	0.00000000122318
Arabidopsis lyrata	scaffold_4	15	CH_aly_6	6	8	0.00000000493356
Arabidopsis lyrata	scaffold_5	15	CH_aly_4	7	12	0.000000000566582
Arabidopsis lyrata	scaffold_6	15	CH_aly_8	6	9	0.0000000147482
Arabidopsis lyrata	scaffold_7	15	CH_aly_9	6	9	0.0000000147482
Arabidopsis lyrata	scaffold_8	15	CH_aly_3	6	6	0.000000000177456
Arabidopsis lyrata	scaffold_9	15	CH_aly_12	5	8	0.0000023777
Arabidopsis lyrata	scaffold_2	16	CH_aly_1	19	268	0.000000000000209437
Arabidopsis lyrata	scaffold_4	16	CH_aly_3	11	243	0.000284437
Lotus japonicus	chr2	13	CH_lja_209	3	3	0.000198366
Solanum lycopersicum	ch10	13	CH_sly_421	3	6	0.0000118444

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V