Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR003689
- Description
- Zinc/iron permease
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00032 | 13 | CH_atr_143 | 4 | 5 | 0.000000010106 |
Amborella trichopoda | scaffold00062 | 13 | CH_atr_246 | 3 | 3 | 0.00000426351 |
Arabidopsis lyrata | scaffold_1 | 13 | CH_aly_356 | 3 | 4 | 0.0000423386 |
Brassica rapa | A01 | 13 | CH_bra_44 | 5 | 5 | 0.0000000000126548 |
Carica papaya | supercontig_8 | 13 | CH_cpa_180 | 3 | 5 | 0.0000233123 |
Eucalyptus grandis | scaffold_11 | 13 | CH_egr_359 | 5 | 5 | 0.00000000000294138 |
Eucalyptus grandis | scaffold_5 | 13 | CH_egr_785 | 4 | 11 | 0.00000174283 |
Eucalyptus grandis | scaffold_6 | 13 | CH_egr_876 | 3 | 3 | 0.00000906866 |
Malus domestica | 5 | 13 | CH_mdo_227 | 3 | 3 | 0.00000425065 |
Medicago truncatula | chr3 | 13 | CH_mtr_276 | 5 | 14 | 0.000000000113783 |
Populus trichocarpa | Chr06 | 13 | CH_ptr_495 | 3 | 4 | 0.0000229093 |
Thellungiella parvula | ch1-1 | 13 | CH_tpa_182 | 3 | 3 | 0.0000217888 |
Thellungiella parvula | ch7-4 | 13 | CH_tpa_77 | 4 | 4 | 0.0000000190484 |
Vitis vinifera | chr10 | 13 | CH_vvi_392 | 3 | 3 | 0.00000822222 |
Vitis vinifera | chr19 | 13 | CH_vvi_578 | 3 | 7 | 0.000287215 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |