Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR003480
- Description
- Transferase
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00002 | 13 | CH_atr_55 | 7 | 8 | 0.000000000000183786 |
Amborella trichopoda | scaffold00011 | 13 | CH_atr_107 | 6 | 8 | 0.000000000253727 |
Amborella trichopoda | scaffold00025 | 13 | CH_atr_111 | 8 | 30 | 0.000000000319581 |
Amborella trichopoda | scaffold00045 | 13 | CH_atr_491 | 3 | 3 | 0.000512933 |
Amborella trichopoda | scaffold00058 | 13 | CH_atr_490 | 3 | 3 | 0.000512933 |
Arabidopsis lyrata | scaffold_5 | 13 | CH_aly_290 | 4 | 5 | 0.00000387754 |
Arabidopsis lyrata | scaffold_5 | 13 | CH_aly_140 | 6 | 11 | 0.00000000161521 |
Arabidopsis lyrata | scaffold_7 | 13 | CH_aly_141 | 5 | 5 | 0.00000000166783 |
Arabidopsis lyrata | scaffold_8 | 13 | CH_aly_499 | 3 | 3 | 0.000356627 |
Arabidopsis thaliana | 3 | 13 | CH_ath_252 | 4 | 5 | 0.0000018815 |
Arabidopsis thaliana | 5 | 13 | CH_ath_466 | 3 | 3 | 0.00021103 |
Beta vulgaris | 0028.scaffold00107 | 13 | CH_bvu_355 | 3 | 3 | 0.000198477 |
Beta vulgaris | Bvchr3.sca009 | 13 | CH_bvu_357 | 3 | 3 | 0.000198477 |
Beta vulgaris | Bvchr5.sca008 | 13 | CH_bvu_483 | 3 | 4 | 0.000792663 |
Beta vulgaris | Bvchr9.sca005 | 13 | CH_bvu_482 | 3 | 4 | 0.000792663 |
Beta vulgaris | Bvchr9.sca026 | 13 | CH_bvu_356 | 3 | 3 | 0.000198477 |
Brassica rapa | A03 | 13 | CH_bra_311 | 4 | 7 | 0.0000658017 |
Brassica rapa | A06 | 13 | CH_bra_470 | 3 | 3 | 0.000733115 |
Capsella rubella | scaffold_4 | 13 | CH_cru_511 | 3 | 3 | 0.000499444 |
Capsella rubella | scaffold_7 | 13 | CH_cru_332 | 4 | 6 | 0.0000193616 |
Capsella rubella | scaffold_7 | 13 | CH_cru_249 | 4 | 4 | 0.00000129617 |
Carica papaya | supercontig_26 | 13 | CH_cpa_18 | 7 | 7 | 4.43689e-16 |
Carica papaya | supercontig_46 | 13 | CH_cpa_63 | 6 | 18 | 0.00000000576218 |
Chlamydomonas reinhardtii | chromosome_10 | 13 | CH_cre_30 | 3 | 3 | 0.0000000191181 |
Citrullus lanatus | Chr2 | 13 | CH_cla_169 | 4 | 4 | 0.000000541729 |
Citrullus lanatus | Chr5 | 13 | CH_cla_65 | 6 | 6 | 0.00000000000230827 |
Citrus sinensis | scaffold00003 | 13 | CH_csi_342 | 3 | 3 | 0.000620843 |
Cucumis melo | CM3.5_scaffold00014 | 13 | CH_cme_324 | 3 | 3 | 0.000183038 |
Cucumis melo | CM3.5_scaffold00029 | 13 | CH_cme_65 | 6 | 6 | 0.00000000000106529 |
Cucumis melo | CM3.5_scaffold00031 | 13 | CH_cme_162 | 4 | 4 | 0.000000336286 |
Cucumis melo | CM3.5_scaffold00044 | 13 | CH_cme_186 | 4 | 5 | 0.00000167895 |
Cucumis melo | CM3.5_scaffold00070 | 13 | CH_cme_147 | 5 | 10 | 0.000000151314 |
Eucalyptus grandis | scaffold_1 | 13 | CH_egr_472 | 6 | 6 | 0.00000000036369 |
Eucalyptus grandis | scaffold_10 | 13 | CH_egr_345 | 7 | 7 | 0.0000000000016683 |
Eucalyptus grandis | scaffold_11 | 13 | CH_egr_1142 | 4 | 6 | 0.000252499 |
Eucalyptus grandis | scaffold_2 | 13 | CH_egr_188 | 9 | 9 | 3.44395e-17 |
Eucalyptus grandis | scaffold_3 | 13 | CH_egr_221 | 12 | 32 | 6.40029e-16 |
Eucalyptus grandis | scaffold_5 | 13 | CH_egr_260 | 9 | 12 | 0.00000000000000748436 |
Eucalyptus grandis | scaffold_5 | 13 | CH_egr_669 | 6 | 11 | 0.000000164724 |
Eucalyptus grandis | scaffold_6 | 13 | CH_egr_1272 | 4 | 7 | 0.000586958 |
Eucalyptus grandis | scaffold_6 | 13 | CH_egr_262 | 8 | 8 | 0.00000000000000760425 |
Eucalyptus grandis | scaffold_6 | 13 | CH_egr_568 | 6 | 8 | 0.0000000101028 |
Eucalyptus grandis | scaffold_7 | 13 | CH_egr_110 | 12 | 13 | 3.98433e-23 |
Eucalyptus grandis | scaffold_7 | 13 | CH_egr_137 | 13 | 23 | 1.49109e-20 |
Eucalyptus grandis | scaffold_8 | 13 | CH_egr_189 | 9 | 9 | 3.44395e-17 |
Eucalyptus grandis | scaffold_8 | 13 | CH_egr_719 | 5 | 6 | 0.000000470878 |
Eucalyptus grandis | scaffold_3 | 14 | CH_egr_147 | 12 | 32 | 6.40029e-16 |
Eucalyptus grandis | scaffold_7 | 14 | CH_egr_101 | 12 | 13 | 3.98433e-23 |
Eucalyptus grandis | scaffold_7 | 14 | CH_egr_117 | 13 | 23 | 1.49109e-20 |
Eucalyptus grandis | scaffold_8 | 14 | CH_egr_205 | 11 | 72 | 0.00000000162975 |
Fragaria vesca | LG1 | 13 | CH_fve_111 | 6 | 6 | 0.0000000000278814 |
Fragaria vesca | LG2 | 13 | CH_fve_127 | 6 | 7 | 0.000000000194668 |
Fragaria vesca | LG3 | 13 | CH_fve_221 | 5 | 6 | 0.0000000557282 |
Fragaria vesca | LG5 | 13 | CH_fve_471 | 4 | 7 | 0.000106978 |
Fragaria vesca | LG6 | 13 | CH_fve_96 | 7 | 10 | 0.00000000000984118 |
Fragaria vesca | LG7 | 13 | CH_fve_287 | 5 | 9 | 0.00000116145 |
Fragaria vesca | scf0513160 | 13 | CH_fve_395 | 4 | 6 | 0.0000459602 |
Fragaria vesca | scf0513160 | 13 | CH_fve_25 | 11 | 15 | 7.7838e-21 |
Fragaria vesca | scf0513160 | 14 | CH_fve_22 | 11 | 15 | 7.7838e-21 |
Glycine max | Gm04 | 13 | CH_gma_142 | 6 | 6 | 0.0000000000197227 |
Glycine max | Gm08 | 13 | CH_gma_475 | 4 | 5 | 0.0000141574 |
Glycine max | Gm12 | 13 | CH_gma_398 | 4 | 4 | 0.00000283754 |
Glycine max | Gm13 | 13 | CH_gma_474 | 4 | 5 | 0.0000141574 |
Glycine max | Gm18 | 13 | CH_gma_333 | 5 | 8 | 0.000000417621 |
Glycine max | Gm18 | 13 | CH_gma_141 | 6 | 6 | 0.0000000000197227 |
Gossypium raimondii | Chr01 | 13 | CH_gra_574 | 3 | 3 | 0.00069241 |
Gossypium raimondii | Chr07 | 13 | CH_gra_294 | 4 | 4 | 0.00000179434 |
Gossypium raimondii | Chr09 | 13 | CH_gra_573 | 3 | 3 | 0.00069241 |
Gossypium raimondii | Chr10 | 13 | CH_gra_247 | 5 | 8 | 0.000000256065 |
Gossypium raimondii | Chr13 | 13 | CH_gra_293 | 4 | 4 | 0.00000179434 |
Lotus japonicus | chr1 | 13 | CH_lja_64 | 5 | 10 | 0.0000000416973 |
Lotus japonicus | chr3 | 13 | CH_lja_309 | 3 | 5 | 0.00089595 |
Lotus japonicus | chr4 | 13 | CH_lja_137 | 4 | 8 | 0.00000862397 |
Malus domestica | 10 | 13 | CH_mdo_103 | 6 | 14 | 0.0000000199356 |
Malus domestica | 16 | 13 | CH_mdo_553 | 3 | 3 | 0.000565212 |
Malus domestica | 5 | 13 | CH_mdo_56 | 6 | 9 | 0.000000000563084 |
Manihot esculenta | scaffold03060 | 13 | CH_mes_375 | 3 | 3 | 0.000486342 |
Manihot esculenta | scaffold04953 | 13 | CH_mes_67 | 5 | 5 | 0.0000000036219 |
Manihot esculenta | scaffold06609 | 13 | CH_mes_156 | 5 | 11 | 0.00000165073 |
Manihot esculenta | scaffold07543 | 13 | CH_mes_374 | 3 | 3 | 0.000486342 |
Manihot esculenta | scaffold08316 | 13 | CH_mes_376 | 3 | 3 | 0.000486342 |
Manihot esculenta | scaffold11297 | 13 | CH_mes_373 | 3 | 3 | 0.000486342 |
Medicago truncatula | chr1 | 13 | CH_mtr_866 | 5 | 20 | 0.0000873047 |
Medicago truncatula | chr2 | 13 | CH_mtr_240 | 7 | 11 | 0.0000000000109482 |
Medicago truncatula | chr3 | 13 | CH_mtr_249 | 7 | 12 | 0.0000000000262206 |
Medicago truncatula | chr3 | 13 | CH_mtr_210 | 7 | 9 | 0.00000000000119937 |
Medicago truncatula | chr4 | 13 | CH_mtr_270 | 6 | 7 | 0.0000000000976584 |
Medicago truncatula | chr5 | 13 | CH_mtr_864 | 4 | 7 | 0.0000833325 |
Medicago truncatula | chr6 | 13 | CH_mtr_1243 | 3 | 3 | 0.000981926 |
Medicago truncatula | chr7 | 13 | CH_mtr_132 | 9 | 16 | 0.00000000000000211824 |
Medicago truncatula | chr7 | 13 | CH_mtr_475 | 5 | 7 | 0.000000121406 |
Medicago truncatula | chr7 | 14 | CH_mtr_118 | 10 | 51 | 0.00000000000514518 |
Oryza sativa ssp. japonica | 1 | 13 | CH_osa_523 | 4 | 6 | 0.0000303268 |
Oryza sativa ssp. japonica | 12 | 13 | CH_osa_458 | 5 | 14 | 0.0000096117 |
Oryza sativa ssp. japonica | 2 | 13 | CH_osa_184 | 8 | 30 | 0.000000000365114 |
Oryza sativa ssp. japonica | 6 | 13 | CH_osa_407 | 4 | 4 | 0.00000202968 |
Oryza sativa ssp. japonica | 8 | 13 | CH_osa_201 | 6 | 9 | 0.000000000975789 |
Populus trichocarpa | Chr01 | 13 | CH_ptr_143 | 7 | 8 | 0.00000000000200374 |
Populus trichocarpa | Chr04 | 13 | CH_ptr_716 | 7 | 77 | 0.000490028 |
Populus trichocarpa | Chr04 | 13 | CH_ptr_445 | 4 | 4 | 0.0000061895 |
Populus trichocarpa | Chr05 | 13 | CH_ptr_309 | 5 | 6 | 0.000000128178 |
Populus trichocarpa | Chr08 | 13 | CH_ptr_439 | 5 | 10 | 0.00000532156 |
Populus trichocarpa | Chr10 | 13 | CH_ptr_274 | 5 | 5 | 0.0000000214249 |
Populus trichocarpa | Chr13 | 13 | CH_ptr_444 | 4 | 4 | 0.0000061895 |
Populus trichocarpa | Chr18 | 13 | CH_ptr_785 | 4 | 9 | 0.000769044 |
Populus trichocarpa | Chr19 | 13 | CH_ptr_644 | 5 | 19 | 0.000239244 |
Populus trichocarpa | Chr04 | 14 | CH_ptr_94 | 12 | 170 | 0.000000052565 |
Prunus persica | scaffold_1 | 13 | CH_ppe_707 | 3 | 3 | 0.000547965 |
Prunus persica | scaffold_3 | 13 | CH_ppe_6 | 18 | 19 | 4.46806e-42 |
Prunus persica | scaffold_3 | 13 | CH_ppe_73 | 10 | 20 | 6.4341e-17 |
Prunus persica | scaffold_5 | 13 | CH_ppe_337 | 5 | 9 | 0.000000467429 |
Prunus persica | scaffold_7 | 13 | CH_ppe_44 | 10 | 11 | 3.90741e-21 |
Prunus persica | scaffold_3 | 14 | CH_ppe_51 | 10 | 20 | 6.4341e-17 |
Prunus persica | scaffold_3 | 14 | CH_ppe_6 | 18 | 19 | 4.46806e-42 |
Prunus persica | scaffold_7 | 14 | CH_ppe_41 | 10 | 11 | 3.90741e-21 |
Ricinus communis | 29745 | 13 | CH_rco_214 | 4 | 4 | 0.0000032691 |
Ricinus communis | 29905 | 13 | CH_rco_113 | 6 | 10 | 0.00000000790359 |
Ricinus communis | 29929 | 13 | CH_rco_28 | 9 | 11 | 7.41688e-17 |
Ricinus communis | 30147 | 13 | CH_rco_93 | 6 | 8 | 0.00000000105998 |
Ricinus communis | 30148 | 13 | CH_rco_129 | 6 | 12 | 0.0000000345736 |
Ricinus communis | 29929 | 14 | CH_rco_17 | 10 | 32 | 0.000000000000262046 |
Solanum lycopersicum | ch02 | 13 | CH_sly_271 | 5 | 7 | 0.000000134576 |
Solanum lycopersicum | ch08 | 13 | CH_sly_775 | 3 | 3 | 0.000822885 |
Solanum lycopersicum | ch11 | 13 | CH_sly_321 | 5 | 9 | 0.000000803708 |
Solanum tuberosum | chr01 | 13 | CH_stu_103 | 10 | 12 | 2.97441e-18 |
Solanum tuberosum | chr02 | 13 | CH_stu_202 | 7 | 7 | 0.000000000000716809 |
Solanum tuberosum | chr03 | 13 | CH_stu_638 | 4 | 4 | 0.0000106244 |
Solanum tuberosum | chr07 | 13 | CH_stu_1083 | 4 | 8 | 0.000733914 |
Solanum tuberosum | chr10 | 13 | CH_stu_201 | 7 | 7 | 0.000000000000716809 |
Solanum tuberosum | chr12 | 13 | CH_stu_132 | 10 | 17 | 8.60795e-16 |
Solanum tuberosum | chr01 | 14 | CH_stu_79 | 10 | 12 | 2.97441e-18 |
Solanum tuberosum | chr12 | 14 | CH_stu_90 | 10 | 17 | 8.60795e-16 |
Thellungiella parvula | ch2-4 | 13 | CH_tpa_122 | 4 | 4 | 0.000000685331 |
Thellungiella parvula | ch5-1 | 13 | CH_tpa_273 | 3 | 3 | 0.000307971 |
Thellungiella parvula | ch5-1 | 13 | CH_tpa_272 | 3 | 3 | 0.000307971 |
Theobroma cacao | scaffold_1 | 13 | CH_tca_386 | 4 | 5 | 0.0000138423 |
Theobroma cacao | scaffold_2 | 13 | CH_tca_170 | 6 | 9 | 0.00000000210543 |
Theobroma cacao | scaffold_3 | 13 | CH_tca_193 | 5 | 5 | 0.00000000841999 |
Theobroma cacao | scaffold_4 | 13 | CH_tca_483 | 4 | 7 | 0.0000964196 |
Theobroma cacao | scaffold_5 | 13 | CH_tca_37 | 10 | 14 | 1.80593e-18 |
Theobroma cacao | scaffold_5 | 13 | CH_tca_280 | 5 | 8 | 0.000000467944 |
Theobroma cacao | scaffold_9 | 13 | CH_tca_192 | 5 | 5 | 0.00000000841999 |
Theobroma cacao | scaffold_5 | 14 | CH_tca_31 | 10 | 14 | 1.80593e-18 |
Vitis vinifera | chr1 | 13 | CH_vvi_374 | 4 | 5 | 0.00000550651 |
Vitis vinifera | chr12 | 13 | CH_vvi_154 | 6 | 8 | 0.000000000181066 |
Vitis vinifera | chr2 | 13 | CH_vvi_233 | 5 | 7 | 0.0000000564192 |
Vitis vinifera | chr9 | 13 | CH_vvi_48 | 11 | 21 | 1.42536e-19 |
Vitis vinifera | chr9 | 14 | CH_vvi_38 | 11 | 21 | 1.42536e-19 |
Zea mays | 3 | 13 | CH_zma_144 | 5 | 7 | 0.0000000835879 |
Zea mays | 4 | 13 | CH_zma_276 | 4 | 6 | 0.0000242294 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |