PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00008	13	CH_atr_314	4	6	0.0000733778
Carica papaya	supercontig_19	13	CH_cpa_73	5	5	0.0000000150197
Cucumis melo	CM3.5_scaffold00015	13	CH_cme_460	3	3	0.000593499
Eucalyptus grandis	scaffold_11	13	CH_egr_301	14	71	0.0000000000000759267
Eucalyptus grandis	scaffold_6	13	CH_egr_493	6	6	0.000000000839258
Eucalyptus grandis	scaffold_10	14	CH_egr_271	10	164	0.00089758
Eucalyptus grandis	scaffold_11	14	CH_egr_176	14	71	0.0000000000000759267
Eucalyptus grandis	scaffold_8	14	CH_egr_249	11	138	0.0000103313
Fragaria vesca	LG4	13	CH_fve_91	10	35	0.00000000000628298
Fragaria vesca	LG4	14	CH_fve_34	10	35	0.00000000000628298
Glycine max	Gm19	13	CH_gma_385	5	7	0.00000194437
Lotus japonicus	chr1	13	CH_lja_305	3	4	0.000710475
Medicago truncatula	chr4	13	CH_mtr_324	6	8	0.00000000116681
Medicago truncatula	chr7	14	CH_mtr_120	10	49	0.0000000000208709
Prunus persica	scaffold_4	13	CH_ppe_763	5	20	0.000988619
Solanum tuberosum	chr05	13	CH_stu_477	5	6	0.000000374387
Solanum tuberosum	chr05	13	CH_stu_705	5	11	0.0000283011
Solanum tuberosum	chr11	14	CH_stu_152	12	283	0.000256735
Vitis vinifera	chr9	13	CH_vvi_415	5	9	0.0000194139

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V