PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_59	13	CH_cpa_175	3	3	0.0000188039
Fragaria vesca	LG5	13	CH_fve_359	3	3	0.0000157315
Fragaria vesca	scf0513158	13	CH_fve_358	3	3	0.0000157315
Medicago truncatula	chr1	13	CH_mtr_1238	3	11	0.000943293
Populus trichocarpa	Chr03	13	CH_ptr_474	4	11	0.0000123189
Prunus persica	scaffold_1	13	CH_ppe_263	4	4	0.0000000266923
Ricinus communis	29747	13	CH_rco_241	3	3	0.0000192385
Solanum lycopersicum	ch05	13	CH_sly_453	3	3	0.0000269407
Solanum tuberosum	chr05	13	CH_stu_409	4	4	0.0000000256748
Vitis vinifera	chr17	13	CH_vvi_416	3	3	0.0000220617
Zea mays	1	13	CH_zma_304	3	3	0.0000502474

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V