Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR003137
- Description
- Protease-associated domain, PA
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_6 | 13 | CH_aly_210 | 4 | 4 | 0.00000022112 |
Brassica rapa | A09 | 13 | CH_bra_458 | 3 | 4 | 0.000531137 |
Carica papaya | supercontig_29 | 13 | CH_cpa_201 | 3 | 3 | 0.0000701257 |
Chlamydomonas reinhardtii | chromosome_5 | 13 | CH_cre_86 | 3 | 7 | 0.0000561374 |
Cucumis melo | CM3.5_scaffold00005 | 13 | CH_cme_462 | 3 | 5 | 0.000626321 |
Fragaria vesca | scf0512956 | 13 | CH_fve_568 | 3 | 4 | 0.000229128 |
Gossypium raimondii | Chr08 | 13 | CH_gra_433 | 3 | 3 | 0.000106212 |
Manihot esculenta | scaffold10292 | 13 | CH_mes_306 | 3 | 3 | 0.000219118 |
Medicago truncatula | chr4 | 13 | CH_mtr_255 | 6 | 10 | 0.0000000000303332 |
Medicago truncatula | chr7 | 13 | CH_mtr_417 | 6 | 26 | 0.000000032754 |
Populus trichocarpa | Chr01 | 13 | CH_ptr_632 | 3 | 3 | 0.000186454 |
Populus trichocarpa | Chr03 | 13 | CH_ptr_756 | 3 | 4 | 0.000744894 |
Populus trichocarpa | Chr07 | 13 | CH_ptr_631 | 3 | 3 | 0.000186454 |
Prunus persica | scaffold_1 | 13 | CH_ppe_331 | 4 | 4 | 0.000000329088 |
Prunus persica | scaffold_1 | 13 | CH_ppe_582 | 3 | 3 | 0.000182598 |
Ricinus communis | 30068 | 13 | CH_rco_322 | 3 | 3 | 0.000132196 |
Solanum tuberosum | chr02 | 13 | CH_stu_594 | 4 | 5 | 0.00000507744 |
Solanum tuberosum | chr02 | 14 | CH_stu_115 | 10 | 92 | 0.000000000667859 |
Theobroma cacao | scaffold_3 | 13 | CH_tca_481 | 3 | 3 | 0.000092326 |
Vitis vinifera | chr3 | 13 | CH_vvi_579 | 3 | 3 | 0.000290366 |
Vitis vinifera | chrUn | 13 | CH_vvi_195 | 5 | 6 | 0.00000000785188 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |