PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	13	CH_aly_56	6	6	0.0000000000000066843
Arabidopsis thaliana	5	13	CH_ath_42	6	6	0.00000000000000297752
Beta vulgaris	Bvchr2.sca018	13	CH_bvu_228	3	3	0.00000783278
Capsella rubella	scaffold_7	13	CH_cru_178	4	4	0.0000000234118
Eucalyptus grandis	scaffold_6	13	CH_egr_1019	3	4	0.0000598783
Fragaria vesca	LG6	13	CH_fve_356	3	3	0.0000139836
Fragaria vesca	LG6	13	CH_fve_355	3	3	0.0000139836
Malus domestica	12	13	CH_mdo_60	5	10	0.000000000727461
Oryza sativa ssp. japonica	2	13	CH_osa_131	6	13	0.00000000000299464
Oryza sativa ssp. japonica	3	13	CH_osa_93	6	7	0.0000000000000122487
Physcomitrella patens	scaffold_33	13	CH_ppa_97	3	5	0.000324702
Physcomitrella patens	scaffold_48	13	CH_ppa_38	4	11	0.0000102323
Solanum lycopersicum	ch03	13	CH_sly_108	6	9	0.000000000000347342
Solanum tuberosum	chr03	13	CH_stu_292	5	8	0.000000000289827
Zea mays	1	13	CH_zma_153	4	5	0.000000156833
Zea mays	1	13	CH_zma_464	3	5	0.000346243
Zea mays	5	13	CH_zma_54	7	25	0.00000000000930132
Zea mays	6	13	CH_zma_63	7	34	0.0000000001034

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V