PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00036	13	CH_atr_114	4	7	0.000000000777444
Citrullus lanatus	Chr11	13	CH_cla_50	5	6	0.0000000000000496009
Citrus sinensis	scaffold00069	13	CH_csi_143	3	3	0.00000112676
Eucalyptus grandis	scaffold_3	13	CH_egr_934	3	4	0.0000233408
Eucalyptus grandis	scaffold_3	13	CH_egr_532	5	15	0.00000000405382
Eucalyptus grandis	scaffold_3	13	CH_egr_1156	3	8	0.000326246
Eucalyptus grandis	scaffold_8	13	CH_egr_434	5	8	0.0000000000758048
Fragaria vesca	LG5	13	CH_fve_216	4	8	0.0000000450854
Fragaria vesca	scf0513146	13	CH_fve_78	5	6	0.00000000000115805
Malus domestica	16	13	CH_mdo_350	3	12	0.000115845
Medicago truncatula	chr4	13	CH_mtr_582	4	36	0.00000106852
Oryza sativa ssp. japonica	8	13	CH_osa_283	3	3	0.0000000381964
Ricinus communis	30115	13	CH_rco_188	3	3	0.00000081004
Solanum lycopersicum	ch02	13	CH_sly_252	4	5	0.0000000579757
Solanum lycopersicum	ch05	13	CH_sly_221	6	39	0.000000016878
Solanum lycopersicum	ch05	13	CH_sly_36	11	44	2.44578e-21
Solanum lycopersicum	ch05	14	CH_sly_13	18	196	6.13916e-30
Solanum lycopersicum	ch05	15	CH_sly_6	3	6	0.0000162849
Solanum tuberosum	chr02	13	CH_stu_186	5	5	0.000000000000344212
Solanum tuberosum	chr03	13	CH_stu_558	3	3	0.00000272267
Vitis vinifera	chr11	13	CH_vvi_167	4	4	0.000000000631848
Zea mays	4	13	CH_zma_524	2	2	0.000754375

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V