PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR002921
Description: Lipase, class 3

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00038	13	CH_atr_70	6	9	0.00000000000219165
Arabidopsis lyrata	scaffold_6	13	CH_aly_88	6	8	0.00000000000384669
Arabidopsis thaliana	5	13	CH_ath_75	6	8	0.00000000000286434
Beta vulgaris	Bvchr3.sca003	13	CH_bvu_150	4	4	0.0000000641638
Capsella rubella	scaffold_6	13	CH_cru_44	8	10	5.57035e-17
Citrullus lanatus	Chr5	13	CH_cla_167	4	5	0.000000483801
Cucumis melo	CM3.5_scaffold00007	13	CH_cme_241	3	3	0.0000479546
Cucumis melo	CM3.5_scaffold00026	13	CH_cme_492	3	6	0.000956505
Cucumis melo	CM3.5_scaffold00029	13	CH_cme_240	3	3	0.0000479546
Eucalyptus grandis	scaffold_11	13	CH_egr_604	5	7	0.00000003614
Eucalyptus grandis	scaffold_5	13	CH_egr_636	6	18	0.0000000659973
Eucalyptus grandis	scaffold_5	13	CH_egr_892	4	6	0.0000121048
Eucalyptus grandis	scaffold_8	13	CH_egr_413	6	7	0.000000000025386
Eucalyptus grandis	scaffold_8	13	CH_egr_169	9	11	1.7031e-18
Eucalyptus grandis	scaffold_8	13	CH_egr_691	6	22	0.000000263346
Eucalyptus grandis	scaffold_9	13	CH_egr_412	6	7	0.000000000025386
Eucalyptus grandis	scaffold_8	14	CH_egr_184	15	261	0.000000000000893162
Glycine max	Gm01	13	CH_gma_248	6	19	0.0000000259027
Glycine max	Gm02	13	CH_gma_816	3	4	0.000963818
Glycine max	Gm06	13	CH_gma_661	3	3	0.00024125
Glycine max	Gm07	13	CH_gma_662	3	3	0.00024125
Glycine max	Gm17	13	CH_gma_330	4	4	0.000000388307
Glycine max	Gm18	13	CH_gma_660	3	3	0.00024125
Gossypium raimondii	Chr07	13	CH_gra_116	6	7	0.00000000000513567
Lotus japonicus	chr2	13	CH_lja_63	4	5	0.0000000333237
Malus domestica	5	13	CH_mdo_111	4	4	0.0000000481488
Medicago truncatula	chr6	13	CH_mtr_345	5	12	0.00000000393039
Oryza sativa ssp. japonica	1	13	CH_osa_836	3	6	0.000842436
Oryza sativa ssp. japonica	1	13	CH_osa_665	3	4	0.000168714
Oryza sativa ssp. japonica	12	13	CH_osa_765	3	5	0.000421502
Physcomitrella patens	scaffold_1	13	CH_ppa_63	3	3	0.0000868314
Populus trichocarpa	Chr14	13	CH_ptr_198	5	5	0.000000000231014
Prunus persica	scaffold_5	13	CH_ppe_642	3	4	0.000284654
Prunus persica	scaffold_7	13	CH_ppe_336	4	5	0.000000461701
Ricinus communis	29900	13	CH_rco_168	4	5	0.000000337053
Solanum lycopersicum	ch02	13	CH_sly_42	10	18	8.94099e-20
Solanum lycopersicum	ch02	13	CH_sly_570	3	3	0.00014448
Solanum lycopersicum	ch02	14	CH_sly_31	10	18	8.94099e-20
Solanum tuberosum	chr02	13	CH_stu_933	3	3	0.00024366
Solanum tuberosum	chr02	13	CH_stu_491	4	4	0.000000450862
Solanum tuberosum	chr02	13	CH_stu_67	13	33	3.08209e-23
Solanum tuberosum	chr05	13	CH_stu_934	3	3	0.00024366
Solanum tuberosum	chr02	14	CH_stu_51	18	108	5.32626e-26
Theobroma cacao	scaffold_1	13	CH_tca_347	4	7	0.00000409215
Theobroma cacao	scaffold_6	13	CH_tca_176	5	7	0.00000000326772
Vitis vinifera	chr14	13	CH_vvi_191	5	7	0.00000000614268
Vitis vinifera	chr16	13	CH_vvi_510	3	3	0.000120406
Vitis vinifera	chr17	13	CH_vvi_350	5	18	0.00000247084
Vitis vinifera	chr5	13	CH_vvi_209	5	8	0.0000000163593
Vitis vinifera	chr7	13	CH_vvi_636	3	4	0.000481035

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V