Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR002401
- Description
- Cytochrome P450, E-class, group I
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00002 | 13 | CH_atr_293 | 4 | 4 | 0.0000276588 |
Amborella trichopoda | scaffold00039 | 13 | CH_atr_79 | 8 | 12 | 0.0000000000131317 |
Arabidopsis lyrata | scaffold_1 | 13 | CH_aly_190 | 6 | 8 | 0.0000000598845 |
Arabidopsis lyrata | scaffold_4 | 13 | CH_aly_335 | 5 | 8 | 0.0000188715 |
Arabidopsis lyrata | scaffold_5 | 13 | CH_aly_218 | 5 | 5 | 0.0000003424 |
Arabidopsis lyrata | scaffold_7 | 13 | CH_aly_82 | 9 | 14 | 0.00000000000102835 |
Arabidopsis lyrata | scaffold_7 | 13 | CH_aly_363 | 4 | 4 | 0.0000539561 |
Arabidopsis lyrata | scaffold_7 | 14 | CH_aly_39 | 14 | 192 | 0.00000108324 |
Arabidopsis thaliana | 3 | 13 | CH_ath_69 | 8 | 9 | 0.00000000000123706 |
Beta vulgaris | Bvchr7_un.sca001 | 13 | CH_bvu_28 | 10 | 13 | 9.67308e-16 |
Beta vulgaris | Bvchr7_un.sca001 | 14 | CH_bvu_11 | 10 | 13 | 9.67308e-16 |
Brassica rapa | A01 | 13 | CH_bra_175 | 5 | 5 | 0.00000108496 |
Brassica rapa | A04 | 13 | CH_bra_336 | 4 | 4 | 0.000141968 |
Brassica rapa | A05 | 13 | CH_bra_95 | 6 | 6 | 0.0000000082649 |
Brassica rapa | A09 | 13 | CH_bra_164 | 6 | 9 | 0.000000680735 |
Brassica rapa | A09 | 13 | CH_bra_189 | 6 | 10 | 0.00000169072 |
Capsella rubella | scaffold_2 | 13 | CH_cru_514 | 4 | 5 | 0.000552506 |
Capsella rubella | scaffold_3 | 13 | CH_cru_159 | 6 | 6 | 0.00000000704295 |
Capsella rubella | scaffold_4 | 13 | CH_cru_515 | 4 | 5 | 0.000552506 |
Capsella rubella | scaffold_5 | 13 | CH_cru_160 | 6 | 6 | 0.00000000704295 |
Capsella rubella | scaffold_6 | 13 | CH_cru_207 | 6 | 8 | 0.000000194526 |
Capsella rubella | scaffold_7 | 13 | CH_cru_157 | 7 | 10 | 0.00000000653999 |
Capsella rubella | scaffold_7 | 14 | CH_cru_52 | 12 | 151 | 0.000110593 |
Carica papaya | supercontig_189 | 13 | CH_cpa_177 | 4 | 4 | 0.0000210679 |
Chlamydomonas reinhardtii | chromosome_7 | 13 | CH_cre_87 | 3 | 3 | 0.0000626309 |
Chlamydomonas reinhardtii | chromosome_9 | 13 | CH_cre_52 | 5 | 21 | 0.00000239308 |
Citrullus lanatus | Chr0 | 13 | CH_cla_219 | 5 | 7 | 0.0000151361 |
Citrullus lanatus | Chr5 | 13 | CH_cla_31 | 10 | 10 | 1.98251e-17 |
Citrullus lanatus | Chr7 | 13 | CH_cla_322 | 4 | 4 | 0.0000932496 |
Citrullus lanatus | Chr5 | 14 | CH_cla_13 | 10 | 10 | 1.98251e-17 |
Citrus sinensis | scaffold00020 | 13 | CH_csi_55 | 8 | 11 | 0.0000000000670109 |
Citrus sinensis | scaffold00033 | 13 | CH_csi_139 | 5 | 5 | 0.00000074601 |
Citrus sinensis | scaffold00043 | 13 | CH_csi_155 | 6 | 11 | 0.00000275467 |
Eucalyptus grandis | scaffold_2 | 13 | CH_egr_47 | 22 | 27 | 1.09734e-32 |
Eucalyptus grandis | scaffold_4 | 13 | CH_egr_594 | 7 | 8 | 0.000000020783 |
Eucalyptus grandis | scaffold_5 | 13 | CH_egr_826 | 7 | 13 | 0.00000420468 |
Eucalyptus grandis | scaffold_6 | 13 | CH_egr_468 | 9 | 13 | 0.000000000314533 |
Eucalyptus grandis | scaffold_8 | 13 | CH_egr_467 | 8 | 9 | 0.000000000310102 |
Eucalyptus grandis | scaffold_9 | 13 | CH_egr_460 | 13 | 42 | 0.0000000002479 |
Eucalyptus grandis | scaffold_2 | 14 | CH_egr_46 | 22 | 27 | 1.09734e-32 |
Eucalyptus grandis | scaffold_4 | 14 | CH_egr_230 | 12 | 54 | 0.000000217022 |
Eucalyptus grandis | scaffold_6 | 14 | CH_egr_154 | 25 | 152 | 0.00000000000000177068 |
Eucalyptus grandis | scaffold_9 | 14 | CH_egr_198 | 13 | 42 | 0.0000000002479 |
Fragaria vesca | LG2 | 13 | CH_fve_150 | 9 | 21 | 0.000000000916405 |
Fragaria vesca | LG5 | 13 | CH_fve_196 | 7 | 11 | 0.0000000185837 |
Fragaria vesca | LG7 | 13 | CH_fve_218 | 8 | 20 | 0.0000000514692 |
Fragaria vesca | LG7 | 13 | CH_fve_48 | 12 | 24 | 0.00000000000000366276 |
Fragaria vesca | scf0513160 | 13 | CH_fve_115 | 8 | 11 | 0.0000000000716955 |
Fragaria vesca | LG7 | 14 | CH_fve_28 | 12 | 24 | 0.00000000000000366276 |
Glycine max | Gm07 | 13 | CH_gma_771 | 4 | 5 | 0.000599724 |
Glycine max | Gm09 | 13 | CH_gma_307 | 6 | 8 | 0.000000155137 |
Glycine max | Gm11 | 13 | CH_gma_526 | 7 | 28 | 0.0000397704 |
Glycine max | Gm20 | 13 | CH_gma_422 | 5 | 6 | 0.00000491205 |
Gossypium raimondii | Chr04 | 13 | CH_gra_437 | 5 | 8 | 0.000112538 |
Gossypium raimondii | Chr10 | 13 | CH_gra_37 | 13 | 13 | 6.72516e-23 |
Gossypium raimondii | Chr11 | 13 | CH_gra_123 | 15 | 80 | 0.0000000000193769 |
Gossypium raimondii | Chr09 | 14 | CH_gra_75 | 12 | 132 | 0.00010457 |
Gossypium raimondii | Chr10 | 14 | CH_gra_36 | 13 | 13 | 6.72516e-23 |
Gossypium raimondii | Chr11 | 14 | CH_gra_57 | 16 | 81 | 0.000000000000856537 |
Lotus japonicus | chr4 | 13 | CH_lja_134 | 5 | 10 | 0.00000693893 |
Malus domestica | 1 | 13 | CH_mdo_25 | 10 | 21 | 0.000000000000274874 |
Malus domestica | 11 | 13 | CH_mdo_290 | 4 | 4 | 0.0000371745 |
Malus domestica | 6 | 13 | CH_mdo_82 | 7 | 12 | 0.0000000043598 |
Malus domestica | 1 | 14 | CH_mdo_14 | 10 | 21 | 0.000000000000274874 |
Manihot esculenta | scaffold07488 | 13 | CH_mes_54 | 7 | 7 | 0.00000000016233 |
Manihot esculenta | scaffold09870 | 13 | CH_mes_81 | 7 | 10 | 0.0000000189979 |
Medicago truncatula | chr2 | 13 | CH_mtr_340 | 7 | 11 | 0.00000000266126 |
Medicago truncatula | chr4 | 13 | CH_mtr_259 | 8 | 13 | 0.0000000000546591 |
Medicago truncatula | chr4 | 13 | CH_mtr_596 | 8 | 37 | 0.0000014643 |
Medicago truncatula | chr5 | 13 | CH_mtr_118 | 12 | 26 | 2.9912e-16 |
Medicago truncatula | chr6 | 13 | CH_mtr_322 | 8 | 17 | 0.00000000101316 |
Medicago truncatula | chr4 | 14 | CH_mtr_157 | 12 | 145 | 0.00000196774 |
Medicago truncatula | chr5 | 14 | CH_mtr_85 | 12 | 26 | 2.9912e-16 |
Oryza sativa ssp. japonica | 2 | 13 | CH_osa_572 | 4 | 4 | 0.000052108 |
Oryza sativa ssp. japonica | 3 | 13 | CH_osa_403 | 5 | 6 | 0.00000170469 |
Oryza sativa ssp. japonica | 3 | 13 | CH_osa_571 | 4 | 4 | 0.000052108 |
Populus trichocarpa | Chr02 | 13 | CH_ptr_638 | 4 | 4 | 0.000217486 |
Populus trichocarpa | Chr05 | 13 | CH_ptr_709 | 5 | 10 | 0.00045044 |
Populus trichocarpa | Chr06 | 13 | CH_ptr_408 | 5 | 5 | 0.00000185228 |
Populus trichocarpa | Chr08 | 13 | CH_ptr_626 | 6 | 17 | 0.000179642 |
Prunus persica | scaffold_5 | 13 | CH_ppe_216 | 8 | 12 | 0.00000000080278 |
Prunus persica | scaffold_7 | 13 | CH_ppe_255 | 6 | 6 | 0.0000000194539 |
Prunus persica | scaffold_8 | 13 | CH_ppe_445 | 5 | 6 | 0.0000124043 |
Ricinus communis | 30170 | 13 | CH_rco_215 | 6 | 11 | 0.00000397395 |
Solanum lycopersicum | ch01 | 13 | CH_sly_406 | 5 | 7 | 0.00000986822 |
Solanum tuberosum | chr02 | 13 | CH_stu_248 | 9 | 11 | 0.0000000000319043 |
Solanum tuberosum | chr03 | 13 | CH_stu_465 | 6 | 6 | 0.000000235885 |
Solanum tuberosum | chr04 | 13 | CH_stu_300 | 9 | 13 | 0.000000000404678 |
Solanum tuberosum | chr09 | 13 | CH_stu_11 | 26 | 27 | 2.09232e-43 |
Solanum tuberosum | chr12 | 13 | CH_stu_554 | 7 | 12 | 0.00000239927 |
Thellungiella parvula | ch4-6 | 13 | CH_tpa_58 | 7 | 10 | 0.00000000161278 |
Theobroma cacao | scaffold_3 | 13 | CH_tca_412 | 5 | 7 | 0.0000278452 |
Theobroma cacao | scaffold_5 | 13 | CH_tca_156 | 10 | 28 | 0.000000000638724 |
Theobroma cacao | scaffold_5 | 13 | CH_tca_158 | 7 | 8 | 0.000000000760323 |
Theobroma cacao | scaffold_8 | 13 | CH_tca_27 | 14 | 16 | 3.0318e-23 |
Theobroma cacao | scaffold_8 | 13 | CH_tca_58 | 10 | 12 | 0.00000000000000362727 |
Theobroma cacao | scaffold_5 | 14 | CH_tca_47 | 10 | 28 | 0.000000000638724 |
Theobroma cacao | scaffold_8 | 14 | CH_tca_24 | 14 | 16 | 3.0318e-23 |
Vitis vinifera | chr1 | 13 | CH_vvi_571 | 4 | 4 | 0.000264264 |
Vitis vinifera | chr15 | 13 | CH_vvi_572 | 4 | 4 | 0.000264264 |
Vitis vinifera | chr15 | 13 | CH_vvi_87 | 11 | 15 | 0.00000000000000297752 |
Vitis vinifera | chr18 | 13 | CH_vvi_304 | 6 | 8 | 0.000000709078 |
Vitis vinifera | chr18 | 13 | CH_vvi_76 | 12 | 17 | 1.28824e-16 |
Vitis vinifera | chr18 | 13 | CH_vvi_573 | 4 | 4 | 0.000264264 |
Vitis vinifera | chr7 | 13 | CH_vvi_59 | 12 | 14 | 1.94592e-18 |
Vitis vinifera | chr8 | 13 | CH_vvi_570 | 4 | 4 | 0.000264264 |
Vitis vinifera | chr8 | 13 | CH_vvi_179 | 7 | 8 | 0.00000000200549 |
Vitis vinifera | chr15 | 14 | CH_vvi_49 | 11 | 15 | 0.00000000000000297752 |
Vitis vinifera | chr18 | 14 | CH_vvi_46 | 12 | 17 | 1.28824e-16 |
Vitis vinifera | chr7 | 14 | CH_vvi_42 | 12 | 14 | 1.94592e-18 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |