PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR002401
Description: Cytochrome P450, E-class, group I

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00002	13	CH_atr_293	4	4	0.0000276588
Amborella trichopoda	scaffold00039	13	CH_atr_79	8	12	0.0000000000131317
Arabidopsis lyrata	scaffold_1	13	CH_aly_190	6	8	0.0000000598845
Arabidopsis lyrata	scaffold_4	13	CH_aly_335	5	8	0.0000188715
Arabidopsis lyrata	scaffold_5	13	CH_aly_218	5	5	0.0000003424
Arabidopsis lyrata	scaffold_7	13	CH_aly_82	9	14	0.00000000000102835
Arabidopsis lyrata	scaffold_7	13	CH_aly_363	4	4	0.0000539561
Arabidopsis lyrata	scaffold_7	14	CH_aly_39	14	192	0.00000108324
Arabidopsis thaliana	3	13	CH_ath_69	8	9	0.00000000000123706
Beta vulgaris	Bvchr7_un.sca001	13	CH_bvu_28	10	13	9.67308e-16
Beta vulgaris	Bvchr7_un.sca001	14	CH_bvu_11	10	13	9.67308e-16
Brassica rapa	A01	13	CH_bra_175	5	5	0.00000108496
Brassica rapa	A04	13	CH_bra_336	4	4	0.000141968
Brassica rapa	A05	13	CH_bra_95	6	6	0.0000000082649
Brassica rapa	A09	13	CH_bra_164	6	9	0.000000680735
Brassica rapa	A09	13	CH_bra_189	6	10	0.00000169072
Capsella rubella	scaffold_2	13	CH_cru_514	4	5	0.000552506
Capsella rubella	scaffold_3	13	CH_cru_159	6	6	0.00000000704295
Capsella rubella	scaffold_4	13	CH_cru_515	4	5	0.000552506
Capsella rubella	scaffold_5	13	CH_cru_160	6	6	0.00000000704295
Capsella rubella	scaffold_6	13	CH_cru_207	6	8	0.000000194526
Capsella rubella	scaffold_7	13	CH_cru_157	7	10	0.00000000653999
Capsella rubella	scaffold_7	14	CH_cru_52	12	151	0.000110593
Carica papaya	supercontig_189	13	CH_cpa_177	4	4	0.0000210679
Chlamydomonas reinhardtii	chromosome_7	13	CH_cre_87	3	3	0.0000626309
Chlamydomonas reinhardtii	chromosome_9	13	CH_cre_52	5	21	0.00000239308
Citrullus lanatus	Chr0	13	CH_cla_219	5	7	0.0000151361
Citrullus lanatus	Chr5	13	CH_cla_31	10	10	1.98251e-17
Citrullus lanatus	Chr7	13	CH_cla_322	4	4	0.0000932496
Citrullus lanatus	Chr5	14	CH_cla_13	10	10	1.98251e-17
Citrus sinensis	scaffold00020	13	CH_csi_55	8	11	0.0000000000670109
Citrus sinensis	scaffold00033	13	CH_csi_139	5	5	0.00000074601
Citrus sinensis	scaffold00043	13	CH_csi_155	6	11	0.00000275467
Eucalyptus grandis	scaffold_2	13	CH_egr_47	22	27	1.09734e-32
Eucalyptus grandis	scaffold_4	13	CH_egr_594	7	8	0.000000020783
Eucalyptus grandis	scaffold_5	13	CH_egr_826	7	13	0.00000420468
Eucalyptus grandis	scaffold_6	13	CH_egr_468	9	13	0.000000000314533
Eucalyptus grandis	scaffold_8	13	CH_egr_467	8	9	0.000000000310102
Eucalyptus grandis	scaffold_9	13	CH_egr_460	13	42	0.0000000002479
Eucalyptus grandis	scaffold_2	14	CH_egr_46	22	27	1.09734e-32
Eucalyptus grandis	scaffold_4	14	CH_egr_230	12	54	0.000000217022
Eucalyptus grandis	scaffold_6	14	CH_egr_154	25	152	0.00000000000000177068
Eucalyptus grandis	scaffold_9	14	CH_egr_198	13	42	0.0000000002479
Fragaria vesca	LG2	13	CH_fve_150	9	21	0.000000000916405
Fragaria vesca	LG5	13	CH_fve_196	7	11	0.0000000185837
Fragaria vesca	LG7	13	CH_fve_218	8	20	0.0000000514692
Fragaria vesca	LG7	13	CH_fve_48	12	24	0.00000000000000366276
Fragaria vesca	scf0513160	13	CH_fve_115	8	11	0.0000000000716955
Fragaria vesca	LG7	14	CH_fve_28	12	24	0.00000000000000366276
Glycine max	Gm07	13	CH_gma_771	4	5	0.000599724
Glycine max	Gm09	13	CH_gma_307	6	8	0.000000155137
Glycine max	Gm11	13	CH_gma_526	7	28	0.0000397704
Glycine max	Gm20	13	CH_gma_422	5	6	0.00000491205
Gossypium raimondii	Chr04	13	CH_gra_437	5	8	0.000112538
Gossypium raimondii	Chr10	13	CH_gra_37	13	13	6.72516e-23
Gossypium raimondii	Chr11	13	CH_gra_123	15	80	0.0000000000193769
Gossypium raimondii	Chr09	14	CH_gra_75	12	132	0.00010457
Gossypium raimondii	Chr10	14	CH_gra_36	13	13	6.72516e-23
Gossypium raimondii	Chr11	14	CH_gra_57	16	81	0.000000000000856537
Lotus japonicus	chr4	13	CH_lja_134	5	10	0.00000693893
Malus domestica	1	13	CH_mdo_25	10	21	0.000000000000274874
Malus domestica	11	13	CH_mdo_290	4	4	0.0000371745
Malus domestica	6	13	CH_mdo_82	7	12	0.0000000043598
Malus domestica	1	14	CH_mdo_14	10	21	0.000000000000274874
Manihot esculenta	scaffold07488	13	CH_mes_54	7	7	0.00000000016233
Manihot esculenta	scaffold09870	13	CH_mes_81	7	10	0.0000000189979
Medicago truncatula	chr2	13	CH_mtr_340	7	11	0.00000000266126
Medicago truncatula	chr4	13	CH_mtr_259	8	13	0.0000000000546591
Medicago truncatula	chr4	13	CH_mtr_596	8	37	0.0000014643
Medicago truncatula	chr5	13	CH_mtr_118	12	26	2.9912e-16
Medicago truncatula	chr6	13	CH_mtr_322	8	17	0.00000000101316
Medicago truncatula	chr4	14	CH_mtr_157	12	145	0.00000196774
Medicago truncatula	chr5	14	CH_mtr_85	12	26	2.9912e-16
Oryza sativa ssp. japonica	2	13	CH_osa_572	4	4	0.000052108
Oryza sativa ssp. japonica	3	13	CH_osa_403	5	6	0.00000170469
Oryza sativa ssp. japonica	3	13	CH_osa_571	4	4	0.000052108
Populus trichocarpa	Chr02	13	CH_ptr_638	4	4	0.000217486
Populus trichocarpa	Chr05	13	CH_ptr_709	5	10	0.00045044
Populus trichocarpa	Chr06	13	CH_ptr_408	5	5	0.00000185228
Populus trichocarpa	Chr08	13	CH_ptr_626	6	17	0.000179642
Prunus persica	scaffold_5	13	CH_ppe_216	8	12	0.00000000080278
Prunus persica	scaffold_7	13	CH_ppe_255	6	6	0.0000000194539
Prunus persica	scaffold_8	13	CH_ppe_445	5	6	0.0000124043
Ricinus communis	30170	13	CH_rco_215	6	11	0.00000397395
Solanum lycopersicum	ch01	13	CH_sly_406	5	7	0.00000986822
Solanum tuberosum	chr02	13	CH_stu_248	9	11	0.0000000000319043
Solanum tuberosum	chr03	13	CH_stu_465	6	6	0.000000235885
Solanum tuberosum	chr04	13	CH_stu_300	9	13	0.000000000404678
Solanum tuberosum	chr09	13	CH_stu_11	26	27	2.09232e-43
Solanum tuberosum	chr12	13	CH_stu_554	7	12	0.00000239927
Thellungiella parvula	ch4-6	13	CH_tpa_58	7	10	0.00000000161278
Theobroma cacao	scaffold_3	13	CH_tca_412	5	7	0.0000278452
Theobroma cacao	scaffold_5	13	CH_tca_156	10	28	0.000000000638724
Theobroma cacao	scaffold_5	13	CH_tca_158	7	8	0.000000000760323
Theobroma cacao	scaffold_8	13	CH_tca_27	14	16	3.0318e-23
Theobroma cacao	scaffold_8	13	CH_tca_58	10	12	0.00000000000000362727
Theobroma cacao	scaffold_5	14	CH_tca_47	10	28	0.000000000638724
Theobroma cacao	scaffold_8	14	CH_tca_24	14	16	3.0318e-23
Vitis vinifera	chr1	13	CH_vvi_571	4	4	0.000264264
Vitis vinifera	chr15	13	CH_vvi_572	4	4	0.000264264
Vitis vinifera	chr15	13	CH_vvi_87	11	15	0.00000000000000297752
Vitis vinifera	chr18	13	CH_vvi_304	6	8	0.000000709078
Vitis vinifera	chr18	13	CH_vvi_76	12	17	1.28824e-16
Vitis vinifera	chr18	13	CH_vvi_573	4	4	0.000264264
Vitis vinifera	chr7	13	CH_vvi_59	12	14	1.94592e-18
Vitis vinifera	chr8	13	CH_vvi_570	4	4	0.000264264
Vitis vinifera	chr8	13	CH_vvi_179	7	8	0.00000000200549
Vitis vinifera	chr15	14	CH_vvi_49	11	15	0.00000000000000297752
Vitis vinifera	chr18	14	CH_vvi_46	12	17	1.28824e-16
Vitis vinifera	chr7	14	CH_vvi_42	12	14	1.94592e-18

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V