PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00111	13	CH_atr_242	3	3	0.00000341081
Beta vulgaris	Bvchr5.sca009	13	CH_bvu_358	3	7	0.000222315
Eucalyptus grandis	scaffold_11	13	CH_egr_1065	3	5	0.000149613
Fragaria vesca	LG3	13	CH_fve_502	3	6	0.000165425
Lotus japonicus	chr1	13	CH_lja_38	4	4	0.00000000278943
Malus domestica	11	13	CH_mdo_226	3	3	0.00000425065
Manihot esculenta	scaffold03614	13	CH_mes_176	3	3	0.00000491883
Medicago truncatula	chr6	13	CH_mtr_197	5	5	0.000000000000536388
Medicago truncatula	chr8	13	CH_mtr_465	4	8	0.000000106293
Oryza sativa ssp. japonica	1	13	CH_osa_136	5	6	0.0000000000058875
Oryza sativa ssp. japonica	3	13	CH_osa_338	4	9	0.000000300871
Prunus persica	scaffold_6	13	CH_ppe_435	3	3	0.0000103669
Ricinus communis	29835	13	CH_rco_329	3	5	0.000164678
Solanum tuberosum	chr05	13	CH_stu_605	3	3	0.00000554258
Vitis vinifera	chr2	13	CH_vvi_397	3	3	0.0000112854
Zea mays	1	13	CH_zma_120	4	5	0.0000000241273
Zea mays	3	13	CH_zma_410	3	6	0.000174293

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V