PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	13	CH_ath_393	3	3	0.0000610065
Capsella rubella	scaffold_5	13	CH_cru_201	4	4	0.000000109723
Capsella rubella	scaffold_6	13	CH_cru_307	5	26	0.0000094173
Carica papaya	supercontig_12	13	CH_cpa_76	4	6	0.0000000411865
Citrullus lanatus	Chr9	13	CH_cla_63	5	6	0.00000000000187033
Cucumis melo	CM3.5_scaffold00048	13	CH_cme_58	5	5	0.000000000000331463
Eucalyptus grandis	scaffold_5	13	CH_egr_658	4	10	0.000000125591
Gossypium raimondii	Chr05	13	CH_gra_166	5	5	0.000000000918146
Gossypium raimondii	Chr11	13	CH_gra_268	4	4	0.000000498061
Oryza sativa ssp. japonica	7	13	CH_osa_27	9	23	2.17492e-24
Thellungiella parvula	ch7-1	13	CH_tpa_325	2	2	0.000794691
Theobroma cacao	scaffold_3	13	CH_tca_605	3	4	0.000545864
Theobroma cacao	scaffold_4	13	CH_tca_360	4	7	0.00000763214
Theobroma cacao	scaffold_5	13	CH_tca_160	6	13	0.00000000089531

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V