PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	13	CH_ath_422	3	4	0.000165034
Arabidopsis thaliana	3	13	CH_ath_176	4	4	0.0000000417825
Beta vulgaris	Bvchr6.sca003	13	CH_bvu_249	3	3	0.0000215402
Capsella rubella	scaffold_5	13	CH_cru_365	3	3	0.0000522907
Citrullus lanatus	Chr1	13	CH_cla_246	3	3	0.0000539001
Cucumis melo	CM3.5_scaffold00007	13	CH_cme_248	3	3	0.0000575261
Cucumis melo	CM3.5_scaffold00027	13	CH_cme_247	3	3	0.0000575261
Eucalyptus grandis	scaffold_3	13	CH_egr_960	3	3	0.0000397874
Eucalyptus grandis	scaffold_5	13	CH_egr_607	4	4	0.0000000395212
Glycine max	Gm13	13	CH_gma_384	5	17	0.00000193343
Oryza sativa ssp. japonica	10	13	CH_osa_811	5	10	0.00071685
Oryza sativa ssp. japonica	10	15	CH_osa_70	5	10	0.00063432
Solanum lycopersicum	ch08	13	CH_sly_468	3	3	0.0000416553
Solanum tuberosum	chr08	13	CH_stu_122	7	8	3.29808e-16
Thellungiella parvula	ch5-1	13	CH_tpa_224	3	3	0.0000935971

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V