PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_6	13	CH_aly_183	3	3	0.0000000597967
Arabidopsis lyrata	scaffold_6	15	CH_aly_43	2	2	0.000378824
Arabidopsis thaliana	5	13	CH_ath_199	3	4	0.00000021255
Capsella rubella	scaffold_6	13	CH_cru_498	2	2	0.000457945
Eucalyptus grandis	scaffold_1	13	CH_egr_752	3	5	0.00000102393
Lotus japonicus	chr4	13	CH_lja_281	2	3	0.000605008
Manihot esculenta	scaffold01551	13	CH_mes_393	2	2	0.000569476
Oryza sativa ssp. japonica	5	13	CH_osa_746	2	2	0.000356818
Populus trichocarpa	Chr08	13	CH_ptr_660	2	2	0.000298812
Solanum tuberosum	chr01	13	CH_stu_461	4	14	0.000000182535
Thellungiella parvula	ch6-6	13	CH_tpa_293	2	2	0.000476815

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V