PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001906
Description: Terpene synthase, N-terminal domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00032	13	CH_atr_375	4	29	0.000168149
Arabidopsis thaliana	3	13	CH_ath_476	3	5	0.000289535
Arabidopsis thaliana	4	13	CH_ath_412	3	4	0.000115895
Capsella rubella	scaffold_8	13	CH_cru_143	5	8	0.0000000039554
Carica papaya	supercontig_1	13	CH_cpa_156	3	4	0.0000067843
Citrullus lanatus	Chr10	13	CH_cla_127	4	5	0.0000000282904
Citrus sinensis	scaffold00012	13	CH_csi_339	3	6	0.000533862
Cucumis melo	CM3.5_scaffold00001	13	CH_cme_325	3	5	0.000201884
Cucumis melo	CM3.5_scaffold00021	13	CH_cme_84	6	15	0.0000000000521198
Eucalyptus grandis	scaffold_4	13	CH_egr_313	7	9	0.000000000000202331
Eucalyptus grandis	scaffold_5	13	CH_egr_734	4	4	0.000000688533
Eucalyptus grandis	scaffold_5	13	CH_egr_157	12	38	3.60633e-19
Eucalyptus grandis	scaffold_6	13	CH_egr_154	9	10	2.12551e-19
Eucalyptus grandis	scaffold_5	14	CH_egr_125	12	38	3.60633e-19
Fragaria vesca	LG3	13	CH_fve_474	4	14	0.000113792
Fragaria vesca	scf0513012	13	CH_fve_389	4	11	0.0000376332
Fragaria vesca	scf0513158	13	CH_fve_169	6	18	0.00000000340878
Glycine max	Gm12	13	CH_gma_525	4	25	0.0000390532
Gossypium raimondii	Chr02	13	CH_gra_484	3	3	0.000161948
Gossypium raimondii	Chr09	13	CH_gra_58	8	9	1.19046e-17
Gossypium raimondii	Chr11	13	CH_gra_150	5	5	0.000000000395552
Malus domestica	11	13	CH_mdo_411	3	5	0.000143513
Malus domestica	11	15	CH_mdo_6	3	5	0.0000424781
Manihot esculenta	scaffold03818	13	CH_mes_214	3	4	0.0000245825
Medicago truncatula	chr2	13	CH_mtr_544	4	7	0.000000539906
Medicago truncatula	chr3	13	CH_mtr_454	4	5	0.0000000772133
Oryza sativa ssp. japonica	3	13	CH_osa_133	6	10	0.0000000000038121
Oryza sativa ssp. japonica	4	13	CH_osa_652	3	4	0.000140657
Oryza sativa ssp. japonica	8	13	CH_osa_653	3	4	0.000140657
Physcomitrella patens	scaffold_1	15	CH_ppa_19	2	2	0.00099167
Populus trichocarpa	scaffold_20	13	CH_ptr_110	7	11	0.0000000000000179386
Prunus persica	scaffold_3	13	CH_ppe_579	3	6	0.000177454
Prunus persica	scaffold_4	13	CH_ppe_578	3	6	0.000177454
Ricinus communis	30156	13	CH_rco_167	4	5	0.000000337053
Ricinus communis	30206	13	CH_rco_383	3	5	0.000527488
Solanum lycopersicum	ch01	15	CH_sly_20	3	9	0.000550276
Solanum tuberosum	chr01	13	CH_stu_56	12	17	1.27079e-24
Solanum tuberosum	chr10	13	CH_stu_578	4	5	0.00000394174
Solanum tuberosum	chr11	13	CH_stu_740	4	8	0.0000549011
Solanum tuberosum	chr01	14	CH_stu_57	12	17	1.27079e-24
Solanum tuberosum	chr12	15	CH_stu_9	3	4	0.0000447073
Theobroma cacao	scaffold_6	13	CH_tca_217	4	4	0.0000000440816
Theobroma cacao	scaffold_7	13	CH_tca_565	4	23	0.000384071
Vitis vinifera	chr19	13	CH_vvi_638	3	3	0.000484976
Vitis vinifera	chrUn	13	CH_vvi_126	11	80	0.00000000000523024
Vitis vinifera	chrUn	13	CH_vvi_214	8	50	0.0000000223991
Vitis vinifera	chrUn	14	CH_vvi_59	11	80	0.00000000000523024
Zea mays	10	13	CH_zma_226	4	10	0.00000370268
Zea mays	2	13	CH_zma_272	3	3	0.0000227032

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V