PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001841
Description: Zinc finger, RING-type

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00086	13	CH_atr_147	6	6	0.000000014838
Arabidopsis lyrata	scaffold_6	13	CH_aly_273	6	7	0.00000256872
Beta vulgaris	Bvchr1.sca002	13	CH_bvu_423	5	9	0.000364385
Capsella rubella	scaffold_6	13	CH_cru_350	5	5	0.0000391454
Carica papaya	supercontig_81	13	CH_cpa_140	5	5	0.00000334704
Citrullus lanatus	Chr3	13	CH_cla_210	5	5	0.00000770982
Citrus sinensis	scaffold00047	13	CH_csi_382	4	4	0.000922094
Citrus sinensis	scaffold00143	13	CH_csi_192	6	9	0.0000168306
Cucumis melo	CM3.5_scaffold00044	13	CH_cme_454	4	4	0.000527901
Eucalyptus grandis	scaffold_6	13	CH_egr_1206	4	4	0.00043053
Eucalyptus grandis	scaffold_7	13	CH_egr_832	5	5	0.00000452818
Fragaria vesca	LG3	13	CH_fve_458	5	6	0.0000795403
Fragaria vesca	LG5	13	CH_fve_101	15	55	0.000000000013353
Fragaria vesca	LG5	14	CH_fve_33	18	90	0.00000000000602611
Fragaria vesca	scf0513124	14	CH_fve_58	18	240	0.000145568
Gossypium raimondii	Chr03	13	CH_gra_192	8	10	0.00000000611596
Medicago truncatula	chr8	13	CH_mtr_466	7	12	0.000000108073
Medicago truncatula	chr3	14	CH_mtr_189	10	104	0.000943102
Oryza sativa ssp. japonica	1	13	CH_osa_567	5	7	0.0000427623
Oryza sativa ssp. japonica	2	13	CH_osa_718	4	4	0.000253169
Oryza sativa ssp. japonica	2	13	CH_osa_150	9	14	0.0000000000172322
Oryza sativa ssp. japonica	6	13	CH_osa_113	14	52	0.000000000000396637
Oryza sativa ssp. japonica	2	14	CH_osa_98	10	39	0.0000000369817
Oryza sativa ssp. japonica	6	14	CH_osa_73	14	52	0.000000000000396637
Prunus persica	scaffold_5	13	CH_ppe_729	5	8	0.000695778
Prunus persica	scaffold_5	13	CH_ppe_125	10	12	0.000000000000359116
Prunus persica	scaffold_6	13	CH_ppe_761	4	4	0.00095094
Prunus persica	scaffold_5	14	CH_ppe_63	10	12	0.000000000000359116
Solanum lycopersicum	ch07	13	CH_sly_413	6	9	0.000010492
Solanum lycopersicum	ch09	13	CH_sly_414	6	9	0.000010492
Solanum lycopersicum	ch11	13	CH_sly_412	5	5	0.0000104292
Solanum tuberosum	chr01	13	CH_stu_677	5	5	0.0000191244
Solanum tuberosum	chr11	13	CH_stu_676	5	5	0.0000191244
Theobroma cacao	scaffold_2	14	CH_tca_49	12	48	0.0000000215368
Vitis vinifera	chr1	13	CH_vvi_358	5	5	0.00000332116
Vitis vinifera	chr7	13	CH_vvi_443	5	7	0.0000685422
Zea mays	5	13	CH_zma_158	6	6	0.00000022415
Zea mays	9	13	CH_zma_148	8	14	0.000000109932

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V