PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_4	13	CH_cru_360	3	5	0.000048895
Citrullus lanatus	Chr5	13	CH_cla_66	5	5	0.00000000000243623
Cucumis melo	CM3.5_scaffold00006	13	CH_cme_109	4	4	0.00000000244914
Eucalyptus grandis	scaffold_5	13	CH_egr_538	5	10	0.00000000442075
Eucalyptus grandis	scaffold_8	13	CH_egr_357	6	10	0.00000000000290816
Oryza sativa ssp. japonica	11	13	CH_osa_643	4	53	0.000120832
Prunus persica	scaffold_2	13	CH_ppe_500	3	6	0.0000708548
Solanum tuberosum	chr01	13	CH_stu_943	3	5	0.000264911
Thellungiella parvula	ch4-6	13	CH_tpa_232	3	6	0.000128662
Thellungiella parvula	ch7-4	13	CH_tpa_159	3	3	0.00000644191
Vitis vinifera	chr13	13	CH_vvi_172	5	11	0.000000000947625

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V