Functional clusters
Information
- Type
- InterPro domain
- Identifier
- IPR001701
- Description
- Glycoside hydrolase, family 9
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00007 | 13 | CH_atr_11 | 13 | 14 | 4.51249e-33 |
Amborella trichopoda | scaffold00027 | 13 | CH_atr_226 | 4 | 6 | 0.00000146431 |
Amborella trichopoda | scaffold00007 | 14 | CH_atr_11 | 13 | 14 | 4.51249e-33 |
Arabidopsis lyrata | scaffold_7 | 13 | CH_aly_322 | 3 | 3 | 0.0000121028 |
Arabidopsis thaliana | 4 | 13 | CH_ath_315 | 3 | 3 | 0.0000138168 |
Brassica rapa | A05 | 13 | CH_bra_295 | 3 | 3 | 0.0000393733 |
Capsella rubella | scaffold_7 | 13 | CH_cru_326 | 3 | 3 | 0.0000154757 |
Eucalyptus grandis | scaffold_5 | 13 | CH_egr_983 | 3 | 4 | 0.0000532263 |
Fragaria vesca | LG2 | 13 | CH_fve_480 | 3 | 5 | 0.000123571 |
Thellungiella parvula | ch7-6 | 13 | CH_tpa_169 | 3 | 3 | 0.0000125996 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |