PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001471
Description: AP2/ERF domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00010	13	CH_atr_495	3	3	0.000607423
Beta vulgaris	Bvchr3.sca001	13	CH_bvu_481	3	3	0.000765655
Brassica rapa	A01	13	CH_bra_456	4	5	0.000511617
Citrus sinensis	scaffold00001	13	CH_csi_42	7	7	0.00000000000263127
Eucalyptus grandis	scaffold_1	13	CH_egr_74	14	16	3.39838e-27
Eucalyptus grandis	scaffold_7	13	CH_egr_229	9	11	0.00000000000000118091
Eucalyptus grandis	scaffold_1	14	CH_egr_72	14	16	3.39838e-27
Fragaria vesca	LG2	13	CH_fve_137	6	7	0.000000000398451
Fragaria vesca	LG7	13	CH_fve_506	4	7	0.000171574
Glycine max	Gm03	13	CH_gma_577	4	4	0.000103428
Glycine max	Gm03	13	CH_gma_326	6	9	0.00000036746
Glycine max	Gm13	13	CH_gma_148	7	7	0.0000000000290573
Glycine max	Gm19	13	CH_gma_349	5	5	0.000000679299
Gossypium raimondii	Chr01	13	CH_gra_100	8	8	0.000000000000247121
Gossypium raimondii	Chr01	13	CH_gra_430	4	4	0.0000990907
Gossypium raimondii	Chr04	13	CH_gra_428	4	4	0.0000990907
Gossypium raimondii	Chr04	13	CH_gra_429	4	4	0.0000990907
Gossypium raimondii	Chr06	13	CH_gra_427	4	4	0.0000990907
Gossypium raimondii	Chr08	13	CH_gra_356	5	7	0.0000146134
Lotus japonicus	chr3	13	CH_lja_311	3	3	0.000999556
Lotus japonicus	chr4	13	CH_lja_170	6	36	0.0000549265
Malus domestica	7	13	CH_mdo_547	4	8	0.000484773
Medicago truncatula	chr1	13	CH_mtr_134	10	20	0.00000000000000239493
Medicago truncatula	chr1	13	CH_mtr_1089	4	7	0.000318255
Medicago truncatula	chr1	13	CH_mtr_198	8	12	0.000000000000587006
Medicago truncatula	chr2	13	CH_mtr_714	4	4	0.00000916813
Medicago truncatula	chr4	13	CH_mtr_946	4	6	0.00013677
Medicago truncatula	chr5	13	CH_mtr_945	4	6	0.00013677
Medicago truncatula	chr6	13	CH_mtr_140	12	46	0.00000000000000512294
Medicago truncatula	chr7	13	CH_mtr_493	6	13	0.000000177971
Medicago truncatula	chr1	14	CH_mtr_93	10	20	0.00000000000000239493
Medicago truncatula	chr5	14	CH_mtr_184	10	232	0.000697567
Medicago truncatula	chr6	14	CH_mtr_97	12	46	0.00000000000000512294
Oryza sativa ssp. japonica	12	13	CH_osa_833	4	10	0.00082009
Oryza sativa ssp. japonica	3	13	CH_osa_499	4	5	0.0000197522
Oryza sativa ssp. japonica	4	13	CH_osa_416	6	22	0.00000230109
Oryza sativa ssp. japonica	6	13	CH_osa_771	4	9	0.000493189
Populus trichocarpa	Chr02	13	CH_ptr_502	4	4	0.0000297437
Populus trichocarpa	Chr14	13	CH_ptr_321	5	5	0.000000153326
Prunus persica	scaffold_5	13	CH_ppe_51	10	10	7.79951e-20
Prunus persica	scaffold_7	13	CH_ppe_278	5	5	0.0000000514951
Prunus persica	scaffold_5	14	CH_ppe_44	10	10	7.79951e-20
Ricinus communis	30174	13	CH_rco_127	5	5	0.000000021536
Solanum lycopersicum	ch01	13	CH_sly_381	5	8	0.00000547808
Solanum lycopersicum	ch02	13	CH_sly_646	4	6	0.000303951
Solanum lycopersicum	ch03	13	CH_sly_380	5	8	0.00000547808
Solanum tuberosum	chr01	13	CH_stu_295	8	14	0.000000000304566
Solanum tuberosum	chr01	13	CH_stu_112	10	11	4.5641e-17
Solanum tuberosum	chr03	13	CH_stu_337	6	6	0.00000000259148
Solanum tuberosum	chr08	13	CH_stu_800	4	4	0.000062882
Solanum tuberosum	chr08	13	CH_stu_483	5	5	0.00000040457
Solanum tuberosum	chr10	13	CH_stu_952	4	5	0.000312783
Solanum tuberosum	chr11	13	CH_stu_953	4	5	0.000312783
Solanum tuberosum	chr12	13	CH_stu_482	5	5	0.00000040457
Solanum tuberosum	chr12	13	CH_stu_55	13	13	1.01185e-24
Solanum tuberosum	chr01	14	CH_stu_82	10	11	4.5641e-17
Solanum tuberosum	chr12	14	CH_stu_55	13	13	1.01185e-24
Theobroma cacao	scaffold_1	13	CH_tca_369	4	4	0.00000891713
Theobroma cacao	scaffold_1	13	CH_tca_494	4	6	0.000132874
Vitis vinifera	chr16	13	CH_vvi_51	11	16	2.16769e-19
Vitis vinifera	chr7	13	CH_vvi_379	4	4	0.00000586932
Vitis vinifera	chr16	14	CH_vvi_39	11	16	2.16769e-19
Zea mays	1	13	CH_zma_159	5	5	0.00000022549
Zea mays	1	13	CH_zma_294	4	4	0.0000403901
Zea mays	2	13	CH_zma_298	6	20	0.000045433
Zea mays	5	13	CH_zma_555	5	16	0.000935674
Zea mays	7	13	CH_zma_507	4	6	0.000600423

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V