PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00057	13	CH_atr_137	3	3	0.00000000937035
Beta vulgaris	0033.scaffold00127	13	CH_bvu_301	2	2	0.0000965624
Capsella rubella	scaffold_3	13	CH_cru_385	2	2	0.0000763242
Eucalyptus grandis	scaffold_8	13	CH_egr_1258	2	2	0.000584266
Fragaria vesca	LG6	13	CH_fve_364	3	11	0.0000177346
Manihot esculenta	scaffold11998	13	CH_mes_432	2	2	0.000949127
Manihot esculenta	scaffold11998	15	CH_mes_7	2	2	0.000284738
Oryza sativa ssp. japonica	1	13	CH_osa_240	3	3	0.00000000763928
Prunus persica	scaffold_6	13	CH_ppe_597	2	2	0.000216255
Ricinus communis	30128	13	CH_rco_150	3	3	0.00000014465
Theobroma cacao	scaffold_5	13	CH_tca_265	3	5	0.000000278813
Vitis vinifera	chr14	13	CH_vvi_226	3	3	0.0000000339411

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V