PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001360
Description: Glycoside hydrolase, family 1

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00005	13	CH_atr_296	3	3	0.0000306973
Amborella trichopoda	scaffold00022	13	CH_atr_101	5	6	0.000000000172476
Amborella trichopoda	scaffold00095	13	CH_atr_179	4	5	0.000000151527
Arabidopsis lyrata	scaffold_2	13	CH_aly_216	4	4	0.000000320378
Arabidopsis lyrata	scaffold_5	13	CH_aly_439	3	3	0.000184509
Beta vulgaris	Bvchr4.sca015	13	CH_bvu_244	3	3	0.0000186029
Beta vulgaris	Bvchr5.sca013	13	CH_bvu_287	3	4	0.0000743594
Beta vulgaris	Bvchr7.sca008	13	CH_bvu_353	3	5	0.000185768
Brassica rapa	A04	13	CH_bra_204	4	5	0.00000320079
Brassica rapa	A05	13	CH_bra_13	8	8	8.32128e-18
Carica papaya	supercontig_80	13	CH_cpa_163	3	3	0.0000115368
Citrullus lanatus	Chr11	13	CH_cla_230	3	3	0.0000282541
Citrullus lanatus	Chr3	13	CH_cla_14	10	15	2.64548e-23
Citrullus lanatus	Chr3	14	CH_cla_11	10	15	2.64548e-23
Citrus sinensis	scaffold00001	13	CH_csi_205	3	3	0.0000267605
Cucumis melo	CM3.5_scaffold00011	13	CH_cme_221	3	3	0.0000177896
Cucumis melo	CM3.5_scaffold00024	13	CH_cme_67	6	10	0.00000000000166773
Cucumis melo	CM3.5_scaffold00032	13	CH_cme_220	3	3	0.0000177896
Eucalyptus grandis	scaffold_2	13	CH_egr_321	6	8	0.000000000000315496
Fragaria vesca	LG6	13	CH_fve_694	3	7	0.000931132
Fragaria vesca	LG7	13	CH_fve_305	4	9	0.00000290831
Fragaria vesca	scf0513158	13	CH_fve_333	4	11	0.00000760632
Glycine max	Gm08	13	CH_gma_203	5	6	0.00000000109705
Glycine max	Gm11	13	CH_gma_18	11	12	5.75841e-27
Glycine max	Gm12	13	CH_gma_30	9	9	3.70996e-22
Glycine max	Gm15	13	CH_gma_600	3	3	0.00011737
Glycine max	Gm11	14	CH_gma_18	11	12	5.75841e-27
Gossypium raimondii	Chr02	13	CH_gra_103	7	22	0.000000000000367203
Malus domestica	11	13	CH_mdo_208	4	7	0.00000200439
Malus domestica	14	13	CH_mdo_429	4	19	0.000219757
Manihot esculenta	scaffold01508	13	CH_mes_301	3	3	0.000191753
Manihot esculenta	scaffold06407	13	CH_mes_188	6	42	0.00000698456
Manihot esculenta	scaffold06914	13	CH_mes_4	12	12	3.79749e-29
Manihot esculenta	scaffold11106	13	CH_mes_18	8	9	4.23751e-17
Manihot esculenta	scaffold06914	14	CH_mes_4	12	12	3.79749e-29
Medicago truncatula	chr2	13	CH_mtr_1204	3	6	0.000739402
Medicago truncatula	chr4	13	CH_mtr_84	10	35	9.01987e-19
Medicago truncatula	chr4	14	CH_mtr_71	10	35	9.01987e-19
Oryza sativa ssp. japonica	4	13	CH_osa_162	5	6	0.0000000000479781
Oryza sativa ssp. japonica	5	13	CH_osa_140	6	13	0.00000000000854128
Populus trichocarpa	Chr01	13	CH_ptr_12	20	49	2.2321e-43
Populus trichocarpa	Chr01	14	CH_ptr_12	20	49	2.2321e-43
Prunus persica	scaffold_2	13	CH_ppe_149	6	6	0.0000000000088214
Prunus persica	scaffold_3	13	CH_ppe_705	3	3	0.000526335
Prunus persica	scaffold_6	13	CH_ppe_197	6	8	0.000000000245929
Prunus persica	scaffold_6	13	CH_ppe_10	16	19	3.89158e-35
Prunus persica	scaffold_6	13	CH_ppe_80	11	34	1.97265e-16
Prunus persica	scaffold_7	13	CH_ppe_457	4	6	0.0000204043
Prunus persica	scaffold_6	14	CH_ppe_10	16	19	3.89158e-35
Prunus persica	scaffold_6	14	CH_ppe_54	11	34	1.97265e-16
Ricinus communis	29986	13	CH_rco_32	6	6	0.00000000000000796699
Ricinus communis	30226	13	CH_rco_108	5	11	0.00000000497689
Solanum lycopersicum	ch01	13	CH_sly_208	4	4	0.00000000716794
Solanum lycopersicum	ch01	13	CH_sly_418	3	3	0.0000113569
Solanum tuberosum	chr01	13	CH_stu_660	3	3	0.0000142211
Solanum tuberosum	chr02	13	CH_stu_369	4	4	0.00000000971608
Solanum tuberosum	chr07	13	CH_stu_321	5	10	0.00000000159876
Solanum tuberosum	chr09	13	CH_stu_661	3	3	0.0000142211
Theobroma cacao	scaffold_9	13	CH_tca_113	5	5	0.0000000000192398
Vitis vinifera	chr13	13	CH_vvi_4	20	21	1.17621e-53
Vitis vinifera	chr7	13	CH_vvi_173	5	6	0.00000000107803
Vitis vinifera	chr13	14	CH_vvi_4	20	21	1.17621e-53
Zea mays	10	13	CH_zma_268	3	3	0.0000188181
Zea mays	2	13	CH_zma_341	3	4	0.0000752294

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V