PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00045	13	CH_atr_134	4	4	0.00000000717691
Arabidopsis thaliana	1	13	CH_ath_291	3	3	0.00000605813
Brassica rapa	A05	13	CH_bra_271	3	3	0.0000221022
Capsella rubella	scaffold_1	13	CH_cru_312	3	3	0.0000116221
Chlamydomonas reinhardtii	chromosome_6	13	CH_cre_110	5	49	0.000118155
Eucalyptus grandis	scaffold_4	13	CH_egr_536	4	4	0.00000000437729
Fragaria vesca	LG3	13	CH_fve_213	4	6	0.0000000374204
Medicago truncatula	chr5	13	CH_mtr_400	4	6	0.0000000194148
Medicago truncatula	chr6	13	CH_mtr_235	5	7	0.00000000000917298
Prunus persica	scaffold_3	13	CH_ppe_475	3	4	0.000030198
Solanum lycopersicum	ch02	13	CH_sly_47	8	10	4.02467e-19
Solanum lycopersicum	ch03	13	CH_sly_231	4	4	0.0000000231867
Solanum tuberosum	chr02	13	CH_stu_231	7	22	0.00000000000695
Solanum tuberosum	chr03	13	CH_stu_53	10	11	3.11489e-25
Solanum tuberosum	chr03	14	CH_stu_53	10	11	3.11489e-25
Zea mays	3	13	CH_zma_134	4	5	0.0000000452966

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V